SimpleSearch - Line and FST details
Line specific information
| Line ID | 120D08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N411468) |
| Segregation Analysis | 50:35:33 |
| Confirmed for Hit | At4g27370 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3602, 3623, 3672 |
Gene hit F9L1
| Sequence (A. th genome BLAST matches underlined) | >60-K012823-022-120-D08-35St TTGACGTAAGGGATGACGCACAATCCCACTATCCTTCGAAGACCCTTCCTCTATATAAGG AAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTT CGGTTTAAACTATCAGTGTTTGATGACAACATGCATGTACAAGTTAAAAAGTAAAAGGAC AAAAAAAATAAAAATTAAAAGGTGGTCCATGTACATGTATATTGTGTAATTAGTAGAATG TTTTGTACACATATCTATGGGATCCTCCCTATAGAGAGTAGTATTACTCAGACGGGTTAT AAAAAGAAAGTACTTTATCATAAGACCACTAATTACAATCCTCTATATCGATAAGAGAAA ACAGTATACAAATTATTCTAATAAAGGAATATTCATGTTAACATGTGTACATTCACCTCC AATTGGGGGCTTAGATGAGAGATCTACAATTGATGCCTAGATTTCACATTAACAGATACC CATTACATCTTGAGATTGATCCGAGATTATGCTAAAATATGCTCTCATGTACATAACTAC TGACAGCTATAGCTTCCAATACGACGTAGCCTATTACCTTACATAACTCCACTTATAAGC TATGGGATCCTACATATATGGAATCCTCTCCACATATGAGCCGATTTCCTTAGACCCNTT TTTTTTCCGGATTAAAGCCGGGTGGGCTCATCTCTGGGATTATAAAGCGGCCCCAGTATC CAGAAAACCCTTAAACGGCGCCTGACCTTTACATTATTTCGCAATATACTTAATAGAGCC TTAAATTGGCTCTTATCCGCGTTTAAAACTTTGGTGTCCCAGAACTCAAAATTCCAGAAT AAAATGAGCCAAATTTTGATAACACATACGGGTGCTTAAAACTCTATCTATATCAGTATT CCCCCAAAAGGCACCTGGGAAAACATATTAAGCAACAGCCAACAAACTTTGGTGCTTTAC CAAAGAGAGAGA |
| GenBank Accession | AL757284 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:5282723 - go to primer design |
| BLAST e Value | 2e-21 |
| Hit Clone Code (BAC ID) | F9L1 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At4g27370
| Sequence (A. th genome BLAST matches underlined) | >60-K012516-022-120-D08-8409 TTGATCCATGTAGATTTCCCGGACATGAAGCTCTTTAAAACTGAAAAATCTCGAGGCTAA TGTACTGACCTCCTTAGAGGGCTCTTTGGACCAGTCAAGAGTGGCTCAGCTGTGCAATGG CGAGAGATGCTACCATATCTTTTATCAATTGTGTGCAGGAGCTTCACCAATTCTTAAAGG TAACATTTTAAACCGAAATATCTATGAACTAATGCAGGAATTCAATCTTTCAGCTACATA TGAGATTCTTTGGAAGTATCCCTGCTGAAGCAAAGTGTAGACATATATAATTTACTGATT AGCTTACTTGCTCAAGGCTAAGAGTAGCTATGGGATCCTCCCTATAGTGAGTCGTGTNAC TCAANNNGNAGGAGCCACCTTCCTTTTCCACTATCTTCACAATAAAGTGACAGATAGCTG GGCAATGGAATCCGAGGAGGTTTCCGGATATTACCCTTTGTTGAAAAGTCTCAATTGCCC TTTGGTCTTCTGAGACTGTATCTTTGATATTTTTGGAGTAAACAAGCGTGTCGTGCTCCA CCATGTTGACGAAGATTTTCTTCTTGTCATTGAGTCGGAAGAGACTCTGTATGAACTGTT CGCCAGTCTTTACCGCGAGTTCTGGTAGGGCCCCTATTTGAATCTTTGACTCCATGGGAA TTGGGGATCCTCTA |
| GenBank Accession | AL757283 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:13698908 - go to primer design |
| BLAST e Value | 2e-138 |
| Hit Clone Code (BAC ID) | M4I22 |
| Hit Gene Code | At4g27370 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | P-loop containing nucleoside triphosphate hydrolases superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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