SimpleSearch - Line and FST details
Line specific information
| Line ID | 125G11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N411987) |
| Segregation Analysis | 50:49:49 |
| Confirmed for Hit | At3g58780 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3599, 3651, 7113 |
Gene hit At4g26780
| Sequence (A. th genome BLAST matches underlined) | >87-K012814-022-125-G11-8409 TTGATCCATGTAGATCTTCCCGGACATGAAGCCATTTACATGTGAATAAATTCGGAGAAC ATCTTTACGAAAAATGCCTCGTTCAATGACTGTCCAATACTACCCATCCTATTTTTTAAT CGCAGCTGTTATAATGCAACACTATACATGTCATCTACATAAGCTCACTACCCCTTATCA ACTACCACATACTGGTGCTCGATTTCGCTTAGGTAAGACAGTACCATGCTAGCCCATGAT ATAATATGGACTGCGTCTGTCCCAAAGATATACAAGTACCTTTGGTTCTTTCTATGGGAT CCTCCCTATAGGGAGTCGTATTACTCAGNATTCTAACACATGGCTTGAATAGATCCACAA GTTTTTTTTTTTTTTTAAATTCCAAGGGTTTTTAAACCAACCATGGTTTAAAGGGAGGGA TTTTAACCCACCCTTGGGGCCCCCCCTTTAAGGGG |
| GenBank Accession | AL764436 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:13487092 - go to primer design |
| BLAST e Value | 1e-16 |
| Hit Clone Code (BAC ID) | F10M23 |
| Hit Gene Code | At4g26780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Co-chaperone GrpE family protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | AL764436 [GenBank] |
Gene hit At1g27440
| Sequence (A. th genome BLAST matches underlined) | >87-K012923-022-125-G11-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGCAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCAGCCTTC AGCATAAACTATGATCAGTTTGACTGCACCGGACACCCATTATTACACCAACAATCCCCA GACGTGCCTAATTCCCACCCTTATCACTTTGCCTTACTATGGGATCCTCCCATATAGAGA TTCGTTCTACTCAAACAACACTCTACTGTAAAAGGATCCATATTGTGTAACACACATGTT AGGGGAAGAGATTCAACTGCGCAAGCCTCTCTAATGTATGGGATCCTACCTATAGTGAGT CGTATTACTCAACNNNCNTTNTGTTTANCGGAAGATCCTNAGAAGAAGAGGAACACACCA ATGGCGGAGAGGCAAGAGTGGATTCTCATATCTACCGCACATGTGTCTGAAGGCCCGGAT CGCAAACTGGCAGAACGAAGAGGAGGATTCTCCCGGACGACCCTCCCAGGGAGGCTCCTT GCCGCAGCGGGAAGAAACCCATCCATTGGCACTAAAGCTTCCACGGGACACCAATTTGAA CCCACCCGCACGGCCGGGGGAGGACACCCTGGGGGCAACCAGCCAGCCCCGGGGGTCAAA ACATTCGGGGAAACAACAGTTCTATTTTGGGGCTGTGGGCTTTGGGAAAAAGATACCGCG CATTGGGACCGCACGAGCGCGCTCGAAACACACCCACGCATGCCCCCAACCTGAGGCCCG CGCGGAATATCTCCCCCTCCCTCCACGATGGGGGGCCCCGTTTCCTTTGCCAAGTGCGTG CAGAG |
| GenBank Accession | FR803710 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:9530920 - go to primer design |
| BLAST e Value | 3e-17 |
| Hit Clone Code (BAC ID) | F17L21 |
| Hit Gene Code | At1g27440 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Exostosin family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At3g58780
| Sequence (A. th genome BLAST matches underlined) | >87-K012814-022-125-G11-8409 TTGATCCATGTAGATCTTCCCGGACATGAAGCCATTTACATGTGAATAAATTCGGAGAAC ATCTTTACGAAAAATGCCTCGTTCAATGACTGTCCAATACTACCCATCCTATTTTTTAAT CGCAGCTGTTATAATGCAACACTATACATGTCATCTACATAAGCTCACTACCCCTTATCA ACTACCACATACTGGTGCTCGATTTCGCTTAGGTAAGACAGTACCATGCTAGCCCATGAT ATAATATGGACTGCGTCTGTCCCAAAGATATACAAGTACCTTTGGTTCTTTCTATGGGAT CCTCCCTATAGGGAGTCGTATTACTCAGNATTCTAACACATGGCTTGAATAGATCCACAA GTTTTTTTTTTTTTTTAAATTCCAAGGGTTTTTAAACCAACCATGGTTTAAAGGGAGGGA TTTTAACCCACCCTTGGGGCCCCCCCTTTAAGGGG |
| GenBank Accession | AL764436 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:21740788 - go to primer design |
| BLAST e Value | 7e-09 |
| Hit Clone Code (BAC ID) | T20N10 |
| Hit Gene Code | At3g58780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | K-box region and MADS-box transcription factor family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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