SimpleSearch - Line and FST details


Line specific information

 
Line ID 129E08
Vector Used pAC161
Line Availability available as T3 set from NASC (N412344)
Segregation Analysis 100:93:76
Confirmed for Hit F14M4 At2g46950
Parent of DUPLO pair none
Parent of pair(s) 3357, 11145

Gene hit F14M4

 
Sequence (A. th genome BLAST matches underlined) 
>61-K012668-022-129-E08-8409
NTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAANTATATCCTGAACA
TTCCAAAATTTTATACAGAAGACAAATTTACTAATCAGAAATTATGTTTGCAATCAACAA
TTATACAATACAAATGAAAACGGTTGAATATATTTGTTTAGCGAAGGTTTGGAAAATTTG
ATTAAATGGTAACATATATAACCATGTGAATATATTTGTTTAGGAAGGTTGCATCAAATA
AAATATGTGGTGTTATGAACAAGTAACAGAGATATATCATTCTCAAAATTAATTACACAA
TAAATGTTAAGAGAGTTAGTGGTGCAGGCAGGGATAGTCGTATGTGGCTTACACTTTTCT
CCGTCACACCTCTTCAAACTTTATCACGTGGATCCTCAATTCCGTATTTTATTGATTTTA
TTTCGTTTTCACTTGCGAAATTACTAATTTATATGCTGTTCTCTTGTGCATTTTCATTGA
AGAAATTTCTTCATCGAATCATGAATCAACGTGTAATGAGCACCGGACCGGACAAATAAG
ATGTTTACATCTCCTTGNTAACGAAGATCTTTCTTTTCTTTACTATACTGGNCACTTTCT
TATTGAAAGAACATTACACTACATTGATATTGGTAATAAATCATTAGTAGGATGTGGATT
TATCTGATGGGACATTGTTACCAAAAATTCTGATCAATCTGACCGTAGGGTCTTTTGACC
AGTCGCTTTGACTTTACTCTTTGGCGCCCTGAATCCCGACCCCGTGTTACGTTAGTTAAG
CAATTGACGCCGTTAGTTGGCATCGGTAATGGGCTAG
GenBank Accession AL764678 [GenBank]
Graphic View Graphic view of sequence AL764678 of line 129E08
Predicted Position of Insertion Chr2:19288612 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F14M4
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g46950

 
Sequence (A. th genome BLAST matches underlined) 
>61-K012958-022-129-E08-35St
TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGTTTGGTAAATGCAAATTGGTAAAACTGGTAAATGCAAATTGCAA
AAGAGTTCCTTGCGGCTGAAGAAAACGGTTTTACTTTTGACCTAACTACAATTGATCATT
GCAGATGAACACGGTGTTTATGGAGTCCCTTCGTCTATACGGACCAGTGTTAAATCTGCT
CCGATTAGCATCAGAAGATATGAAATTAGGAAACCTATGGGATCCTCCCTATAGTGAGTC
TATTAC
GenBank Accession BX890767 [GenBank]
Graphic View Graphic view of gene At2g46950
Predicted Position of Insertion Chr2:19289986 - go to primer design
BLAST e Value 2e-98
Hit Clone Code (BAC ID) F14M4
Hit Gene Code At2g46950 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cytochrome P450, family 709, subfamily B, polypeptide 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37