SimpleSearch - Line and FST details
Line specific information
| Line ID | 134B10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N412790) |
| Segregation Analysis | 100:91:67 |
| Confirmed for Hit | At2g38170 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3648, 83922 |
Gene hit At2g38170
| Sequence (A. th genome BLAST matches underlined) | >74-K012718-022-134-B10-8409 TTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACATTAAGGAGCTGGGGCGGCGG TCTGTCTATGGTATCCTTCATAGTACTAGCAGTCCCATGGACTGTGTTGGTTGACAAGAT TTGACATCTATGGGATCCTTCCTATACTGAGTCATGTTACTGATGACGATGTGGAGCAAG AAACCGCGGTGATTAGTTTTTGGAGCGGTTTTGCATGGTTGGTTGGGATGACACTCGTTA TCGCATTGCTATCGGAGTATGTTGTAGCCACGATTGAGGTAACTCTTTTGAATTCCACAT TGAAACTGACATGATCAACTAAAACATTATAGTAAATACACTTATCGCCAATTGGTTTTG AGTTGGAAACATGCTCGCTAATATAACGTCAACTTTGTTTAGGAAGCATCGGATAAATGG AACTTATCAGTGAGTTTCATAAGCATCATATTGCTTCCTATTGTTGGAAATGCAGCTGAA CATGCTGGAGCCGTTATTTTTGCCTTTAAGAACAAGCTTGTAAGTTCGATTTTATTCCTT AAAATTATCGCTTTTTATCGATCCCCGGATCTATTATATAATGACACAATGCAAGAACTT ATATCAATCCAAATAATTTCTATGGGATCCTTCCTATAGTGAGTCGTTTTACTCAANNNN NNNNANNNNNNNTNTNNNTNTACTTTTCTACTCTCAAAAAATAGCCTACNTCCAAAAATA CAAATACAAAACCCACACAATACCAATAAAATCACATAAAATATTTCTTATATAGTGAAA AAGAAAGAAAGTAGGGCACTGCGATAGCAGAGATGAGAAGTCCGGGTAACGTGCATATTT TTAGAGCGATGAAAGTCAGAAAGCGGTGCTTGTTGAGAGGGACACTAACGGCCGGCTCTT GGCCGAGGTCTCGCCCCANCAGAACACTTCCGCGTCTTGGCCCCCGCTGCGTAATCGTTA CCTGCTTTCTCCCACTGCTTCGATTCACACG |
| GenBank Accession | BX546544 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:15991163 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F16M14 |
| Hit Gene Code | At2g38170 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cation exchanger 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g39780
| Sequence (A. th genome BLAST matches underlined) | >74-K013053-022-134-B10-35St TTGCGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTATAAACTATCCCATGTAAACGAGATGTTTTTGCCTTTATCCCTGAAAAAATCTTTCGA GCTTTAAACCATGAAAAACTGTAATAAGGCTAATGATTATCAAATCTTGCCAACCCAAGC AATTTCTACCCACACCATTAGGACTTTGTCTGATAATTTCATAATGCTTGCAAACATGAC ATTTGAGTTATCTTATCATGCGAGAGCAACCTCACACTTTAGCAGGAAATCAACAATATA AGAATGAATCTCGAACACAAACCTTAGAATCTTTATAGAAGCATATACGTATTCTCATCG ATTGCATCTCTTTTGCAAACCACTTCAGGGGTGATATGAAATGCATTCTGAATGGCTGTT ACGATACCTCCTA |
| GenBank Accession | FR803922 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:16593220 - go to primer design |
| BLAST e Value | 7e-120 |
| Hit Clone Code (BAC ID) | T5I7 |
| Hit Gene Code | At2g39780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ribonuclease 2 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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