SimpleSearch - Line and FST details


Line specific information

 
Line ID 138G05
Vector Used pAC161
Line Availability available as T3 set from NASC (N413229)
Segregation Analysis 50:23:19
Confirmed for Hit At1g05660
Parent of DUPLO pair none
Parent of pair(s) 92378, 92379, 92380, 92381, 92382, 92383, 92384, 92385, 92386, 92387, 92389, 92390, 92391

Gene hit At1g05630

 
Sequence (A. th genome BLAST matches underlined) 
>39-K012803-022-138-G05-35St
NTTTTGACGTAAGGGATGACGCACAATCCCCTATCCTTCGCAGACCCTTCCTCTATATGA
GGAAGCTTCATTTCATTTGGAGAGGACACGGGTACCCGGGGATCCTATTGTCGTTTCCCG
CCTTCTGTTCTCTGCATTTTTTCCTCTGTTTTGTAAGAGATGGCGGCTCCAAAAAAACTG
AATCTTTCTGTGCTGTGTACTCTCCAGGATATGATTCAGGGGAAAAAAAGCGAATTCCTG
CGTGGTGTGACCGAGTTATATATAGAGACACTCAATCTATGGGATCCTCCCTATAGTGAG
TCGTATTACTCAACTTCAGACAGCGCTGAGATGATGCAAAGATCTACACTCATATTCATC
ACAACTGACAGGATCGTGCTACCTATCCATGGTAGCCCATAACCTTACCTAATTGACTCC
ATTGCTATGGAATACTCCCTATAACGATGCCTTTACTAATGGCAACAACGTTGCGCAAAC
TATTAACTGGCGAACTACTTACTCTATGGGATCCTCCCTATAGTGAGGTCGATTACTC
GenBank Accession AL765396 [GenBank]
Graphic View Graphic view of gene At1g05630
Predicted Position of Insertion Chr1:1686043 - go to primer design
BLAST e Value 2e-55
Hit Clone Code (BAC ID) F3F20
Hit Gene Code At1g05630 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Endonuclease/exonuclease/phosphatase family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At1g05660

 
Sequence (A. th genome BLAST matches underlined) 
>39-K012752-022-138-G05-8409
NTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAAAATATCGAGTAGAG
AATATCGAGTTCGGTATTCACCGGATACAAAACGGCGTGAGAATAAAGTGTGGGCGAGGC
CGAGTAACGGATTCGTTAGAACCGTCTTCTTCCAAGACCTATGGGATCCTCCCTATAGTG
AGTCTATATAACTCATACTATTTGCAATGTGCTCATAGATCATTATGAAAATTAAGAGCG
TGTGTTGTGTATACCTAACCCCGTGACCCGGGCCACAAGCAAGTTTGGTGATGACGAGGT
AGCGGGTACCATGGCCAATAACAACACAATCATATGCGGTCTGAACGGGGCTTGCAGAGA
ATGTGACCCCCGTGGAGTACTAAACGTGGAAACCGTCCGAGTCAGGACTCAATGAAGCAG
CCGCTATGCAAGAGCAGCTCATGCGCACGATTTACATTACAGGACATTAAGCTTACTTAC
AACAAAGGAACTATTGCTACTTTCTTCTGATTCAATGCTGGTGGGAAAAGTCTTGGTGTT
ATTTAACCTACTA
GenBank Accession AL765395 [GenBank]
Graphic View Graphic view of gene At1g05660
Predicted Position of Insertion Chr1:1694800 - go to primer design
BLAST e Value 9e-73
Hit Clone Code (BAC ID) F3F20
Hit Gene Code At1g05660 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pectin lyase-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37