SimpleSearch - Line and FST details


Line specific information

 
Line ID 139C01
Vector Used pAC161
Line Availability available as T3 set from NASC (N413273)
Segregation Analysis 50:39:31
Confirmed for Hit At5g01530
Parent of DUPLO pair none
Parent of pair(s) 69672, 97641

Gene hit F13A10

 
Sequence (A. th genome BLAST matches underlined) 
>03-K012875-022-139-C01-8409
AACGGTCCTCTACTTTTTATCGTCCGTTATCCCTATTACCGACTTTCAAAATCACGATAA
TTATCTCGATAATCTCTCTTTTTTGTGAGGAGAGTGAAAACACTTTGATATAGATCGCTA
ACATCATATAAGTATGCAGCCCACGCAATATTACTATTGAGAGGTCTTATCTGCTCAGTT
TCCTTTTGCAGCGATGTATTACCGTCAAGTGGATAAGGGGTGAAACACGCTTAACTTATG
TTCCTATGGACCACGTATAGATATTACAAACTATCCGCTATGGGATCCTAACTGAGTTGT
AGATAATTTAAACACGTGAAAATAAATAGAAAAACAAGAAAATATCTCGCACGCTTTCCA
AAGCCCTATGGGATCCTCCCTATAGTGAGTCGTTTTA
GenBank Accession AL765441 [GenBank]
Graphic View Graphic view of sequence AL765441 of line 139C01
Predicted Position of Insertion Chr2:19103836 - go to primer design
BLAST e Value 2e-24
Hit Clone Code (BAC ID) F13A10
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g01530

 
Sequence (A. th genome BLAST matches underlined) 
>03-K012892-022-139-C01-35St
TTGCGTAAGGGATGACGCACAATCCCCTATCCTTCGAAGACCCTTCCTCTATATAAGGAA
GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG
GTTTAAACTATCAGTGTTTGAACCCAGGCGCCATTTCTCCTGACTGGCTTGATGGTTCCT
TGGTTGGAGATTACGGTTTTGATCCCTTCGGTTTAGGCAAACCGGCCGAGTATCTTCAAT
TCGATATCGATTCACTATGGGATCCTCCCTATAGTGAGTCGTTTTACTC
GenBank Accession AL765442 [GenBank]
Graphic View Graphic view of gene At5g01530
Predicted Position of Insertion Chr5:209259 - go to primer design
BLAST e Value 5e-59
Hit Clone Code (BAC ID) F7A7
Hit Gene Code At5g01530 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation light harvesting complex photosystem II
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37