SimpleSearch - Line and FST details


Line specific information

 
Line ID 142F06
Vector Used pAC161
Line Availability available as T3 set from NASC (N413602)
Segregation Analysis 50:35:22
Confirmed for Hit At4g00020
Parent of DUPLO pair 12335
Parent of pair(s) none
Note

Gene hit At4g00020

 
Sequence (A. th genome BLAST matches underlined) 
>03-K034547-022-142-F06C-8409
GGACTGAGCCATTTAAATTGAATATTTATTCAGTTCTAGAGTTTCGAATTTTTCCGACTC
GTCGTTCTCTGATTCAGCCGGAGAACTAAACCTCGCGATTCAGAATTGCCTACCACACCA
AGAGTCGGGAGTGCGGAAATTTTATTTTTATATTTTCTGTTTTCTTTCCCCCCAAAACCA
TCACCAAAAATCTAAAAAGTTAAAAGACGGCGGGAAAGTTGAAAACGATTTGGGCCGAAA
TTAACTTTGGGCTTGGTTTTAACGACATAACGTCTCAAGACAAGTGAGTTAATGCCACGG
CCTTTTATTGAGGTAAAAAAGGCACGAATGCTAACCGAAAATCGTTCCAAACAACAATTG
CTTACGTGGACATTTTAAAACATCTGTTCAATGGTCATTGGTGACTGACTTCAATGAAAA
TTACATTGCAACAATAGCCAAGTATCACAGAAAGTTACATTGCAACAATTTCCACGTCAA
ATTTCTAAA
GenBank Accession HG968758 [GenBank]
Graphic View Graphic view of gene At4g00020
Predicted Position of Insertion Chr4:10363 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F6N15
Hit Gene Code At4g00020 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation BREAST CANCER 2 like 2A
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX649735 [GenBank]

Gene hit At5g53450

 
Sequence (A. th genome BLAST matches underlined) 
>46-K024348-022-142-F06t-8409
TAGGTGAATGATCCTGCCTCGCAGCGGGAGTTTTTTGTGACGATGCTCATTAGCTACTCT
GAATCTGGAACTACCTGAGTGCAAGTAATTAATCTGCTAAGTGACTATTAGTATGGGATC
CTCCCTATAGTGAGATTTTTGGCATCATGACTACACACATCTTTGATCATGAAAAAACCT
CAATATTGGGAGGATCCGATGGCATCATAATGATATGTGAGTTACGATCTCTTCTCAGAA
TACCTCATGTCAGATGCTATCATCATTTGTCGAATGTCCATGGTACTGAAAGCATCACAA
TGGGATCCTCCAGATACTGAGTTTATGAGATGATGTCGCTAGATGAATTGGTACGGTGGC
TAAATGAAAATAAGATGATTAACATCATCATGATCAAAGCAACGTA
GenBank Accession BX890821 [GenBank]
Graphic View Graphic view of gene At5g53450
Predicted Position of Insertion Chr5:21690870 - go to primer design
BLAST e Value 7e-23
Hit Clone Code (BAC ID) MYN8
Hit Gene Code At5g53450 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation OBP3-responsive protein 1
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 142F07
Other FSTs Supporting this Hit BX890821 [GenBank]


Last Updated on 10.06.2021 13:37