SimpleSearch - Line and FST details
Line specific information
Line ID | 143E10 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N413690) |
Segregation Analysis | 50:21:17 |
Confirmed for Hit | At5g06535 At5g43660 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At5g06535
Sequence (A. th genome BLAST matches underlined) | >77-K013023-022-143-E10-35St CTGACGTAAGGGATGACGCACAATCCCACTATCCTTCGAAGACCCTTCCTCTATATAAGG AAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTT CGGTTTAAACTATCAGTGTTTGGTAAATTCGTTGGGAAAAGAGGAGAAAGTCAAACTGAT TCATGAGAAGTTAAGAAAGCCCAAGCCCATTAAATTGAGTATCACTTAATTCGTTATTTA TACTAAAAAAGATCGTTTTCTATGGGATCCTCCCTATAGTGAGTCTTATTAC |
GenBank Accession | AL765797 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:17535626 - go to primer design |
BLAST e Value | 8e-61 |
Hit Clone Code (BAC ID) | K9D7 |
Hit Gene Code | At5g06535 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | long noncoding RNA |
Insertion Classification | TS2TE |
Confirmation Status | confirmed, show confirmation sequences |
Gene hit At5g43660
Sequence (A. th genome BLAST matches underlined) | >77-K012977-022-143-E10-8409 NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGATAGT TTAAACCGAAGGCGATGTCACAAGAATACAGTAATTCTCCATCATGTATAAAAGTTACAA GAATTGTATAAGGAGATGTCTCAGTCTCATAGGTGTGTATAGTTTCCTAATGCTTTCACT TATAGTTCACGTATCAACGGGTTTTGCCTGAGTTTGGAAACTTTCTTTTATCCCATTGGA CAATTACAGTAGTGTTCACAAAGATCAAAACCTTTCTGTATAACAAATCAGGTCCAAACC AAATCATACATTTAGAATTTCCATATCAATCTATAAGATTCAGAAAACCTGACAATATAA GGTGTAGATAATGACTAAATACCAATATTAATTGTTTGTATAACCCAATTAGTCAAAACC ATTACCTGTACCGATTAAAATCCAAACCAATTTTACAGGTTTGCTGCCACATTTCCTATG GGATCCTCCCTATAGTGAGCGTNTTAC |
GenBank Accession | AL765796 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:17538656 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | K9D7 |
Hit Gene Code | At5g43660 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein |
Insertion Classification | 5' region |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Last Updated on 10.06.2021 13:37 |