SimpleSearch - Line and FST details


Line specific information

 
Line ID 145D11
Vector Used pAC161
Line Availability available as T3 set from NASC (N413871)
Segregation Analysis 50:25:23
Confirmed for Hit At1g12620
Parent of DUPLO pair none
Parent of pair(s) 457, 8606, 84927, 84945, 84961, 85031, 85044, 85059, 85082, 85114, 85123, 85151, 85154, 85156

Gene hit At5g66860

 
Sequence (A. th genome BLAST matches underlined) 
>84-K012979-022-145-D11-8409
TGATCCATGTAGATTTCCCGGACATGAAGCACTTTACATTGAATATATCCTGCATTTGCA
GAGTGACTACCAACGTCTGGGTGTTACTAGATTGATTATACAAACGAGAATGCATGTCAG
ATTGATGTGGAAACTATCACATACCTTCATGGGGAAGTGCTCAACCCGATTGAACAAGCG
TCTAGCGAACCCTGACCGGCTGGGATCTGAAGCTGGAAAGTGGTAAAGCACAAGAATGGG
AGACCAACAGAGTCAATAGTATACTTGATCTGCTTCTTATCCGCCGTCAATAGCTGCTTC
CTCGACACGCCTCGCTTCGAAGCATCAGTATCTATGGGATCCTCCCTATAGTGAGTCGTT
TAACTC
GenBank Accession AL765953 [GenBank]
Graphic View Graphic view of gene At5g66860
Predicted Position of Insertion Chr5:26702055 - go to primer design
BLAST e Value 1e-68
Hit Clone Code (BAC ID) MUD21
Hit Gene Code At5g66860 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain-containing protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At1g12620

 
Sequence (A. th genome BLAST matches underlined) 
>53-K101270-0022-145-D11C-8409
GCATTTACATTGAATATATCCTGGTGTGATTTTCCTTTTGATCATATCCCTCAGCAACTT
GGCACCATCATCCCATCTACCAGCGTAACAAAAGCCTCTAATGAGAGTGGTGTAGATAAT
AATATCAGCTTTGAACCCTTTGATTTCCATTTCATTGAAAAGGTTGAATGCATTGTCGAG
GCTCCCGTCTTTGCACAGACCATCAATGATGATACTGTATTTGACTGCATCGAGCTTGAT
CTTTCTTTCTTCCATCTTTCTGAGCAACTCCATGGCAAGGGCAGTTTGGCCGGACTTACA
CATTACTTTTAAAACCGGTCCATAAGTTACTTCATTGGGTTGAAAGCCAGTCTCAACCAT
TCGATCAATCAAAAGCACAGCATCAGAGACTTTACCGTTGAGACAAAGTCCATTGACCAG
AGCGTTAAGCGTTATGAGAGTGGGTTTATGTCCCATTTCAACCATTCGATCAACTAATTC
CAGAGCTTCGGAAACTCTACCCTCGAGACATAATCCGTTTATCAAAGTTGAAAATGTGAC
TG
GenBank Accession HG968771 [GenBank]
Graphic View Graphic view of gene At1g12620
Predicted Position of Insertion Chr1:4295803 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T12C24
Hit Gene Code At1g12620 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pentatricopeptide repeat (PPR) superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL765954 [GenBank]


Last Updated on 10.06.2021 13:37