SimpleSearch - Line and FST details
Line specific information
Line ID | 146F12 |
Vector Used | pAC161 |
Line Availability | available as T3 set from NASC (N413992) |
Segregation Analysis | 50:30:22 |
Confirmed for Hit | At5g60450 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At3g41762
Sequence (A. th genome BLAST matches underlined) | >94-K104555-0022-146-F12-8409 TACATTGAAATGTCTGAGGAGACACCGAGTGCCAAAAAAAAAGAAATACTTGGAATTTGA AAATTCTTTTTGGCATGCATCATAAGGATACTAAATCCTATTTTCTGGTAAATTTTCATA ATTTTTTGACACCTCTATGGGATCCTCCCTATAGTGAGACNTTTTACTCCCCCATTTAAA CGCGATTCGAAACTCGGCGTTGAAGCCTTCAGAGGATGGGCCATGGAAGACCCCCTGACA AGAGGCTTTTGAAGGAGGCAATTAAGAGGTATATTGAAGAATCACAGTGAGATATACGGC ATGGTGAGTGTATGATAAAAAGGGATTGATAGGTATGACGAGTAGAGCGGAGAGAGGAGA GCAATATAAGAGATGAGAGGATAAGGGAAAGATTGTAGCTGGTGATATAGAAAGAATGTG GTGGAAGACTAACAGTAGATATGAGATAGTGGGAGTATATGGAGAATCAAGAGTAATGAG ATACGAAAAAGATAGAAAAAAAGGAAAAAGAGAGACGAGTAGAGATGGCAAGTAGAAATG GGTTTGGGAGTATGGAATGAGAGCTGGGATAGAAAAGTGAGAAGGACCAGCTGTGGTTGA AAACAGAAGAAAATAGGAGGACAGACGGGGAGGAAGTACAAAGAGACGGAAGATATTAGA GGAGAGCGAGAAGGAAGG |
GenBank Accession | FR804392 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr3:14195872 - go to primer design |
BLAST e Value | 4e-45 |
Hit Clone Code (BAC ID) | F21A14 |
Hit Gene Code | At3g41762 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | hypothetical protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Other FSTs Supporting this Hit | FR804392 [GenBank] |
Gene hit At5g60450
Sequence (A. th genome BLAST matches underlined) | >94-K013026-022-146-F12-35St NACTTGCGTAAGGGATGACGCACANTCCCCTATCCTTCGCAGACCCTTCCTCTATATAAG GAAGTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCT TCGGTTTAAACTATCAGTGTTTGATATACTCTTGTATTAGATCATATGTGGATACTCTTG CATTGTGCTTACAATCTCTTTATTTATTTGTAGATTGAAATCCAATACATACTATGGGAT TGTTCCTATCATGCGATATCTTCCTATATCTTTCGAGTAAAACGGGTCACATGACACATC CATGGAGACCAGAGAAAGCACATTCTGACACATCAATGGATTCAAAGACGAAGATTAAGT TGACGATCTCTTGTGACCAAAACACACTTTAAAACATACGATATAAGCTCCTTTATGGGT ATCAAACCCTATGGGATCCTCCCTATAATGAGTCCTATACCTTTACCTTGATTACGCCAT TCCCAGATACCCATTTCATCTTCAGATTGGTCTGAGATTATGCGAAAATATACACTCATA TACATAAATACTGACAGTTTGAGCTACCAATTCAGTGTAGCCCATTACCTTACATAATTC ACTCAAATGCTATGGGATCCTCCCTATAGTGAG |
GenBank Accession | AL766069 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr5:24308292 - go to primer design |
BLAST e Value | 9e-39 |
Hit Clone Code (BAC ID) | MUF9 |
Hit Gene Code | At5g60450 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | auxin response factor 4 |
Insertion Classification | TS2TE (3') |
Confirmation Status | confirmed, show confirmation sequences |
Other FSTs Supporting this Hit | AL766070 [GenBank] AL766069 [GenBank] |
Last Updated on 10.06.2021 13:37 |