SimpleSearch - Line and FST details


Line specific information

 
Line ID 154H01
Vector Used pAC161
Line Availability available as T3 set from NASC (N414773)
Segregation Analysis 50:49:49
Confirmed for Hit At2g37080
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At4g33650

 
Sequence (A. th genome BLAST matches underlined) 
>84-K018347-022-154-H01t-8409
AATATTCGCGTTGTATTTTTCCCTAAGATTCGATGTGTATACATGTTTTTGCTGCCTATC
GAGAACTACTTTTATTTTTACTATACTATTGGCTATGGGATCTTCNCCTATAAAGAGACA
AATATTCACTCTTTATCTTGAATATGTCAAAATTGCTCATGGGCCCTTACGGCTAAACCC
ATAGTGTTCAATGATATACAGAATTAAATATATATAACTTGTAATATGACTAGTATCTGA
TCATTAACAATTCTATTACTTTGCCTGCCGAAAAACAATTTATAGGAACCCCCTATTATT
GAGAGANNNNGNGNNNATTTTTTTTTTTTCTNNCCCCACCCCCCAAATGTCCATNTCCNN
NNNNNTTTTNTNNNNTGANNNTACAAATAAAAAAAACAACGAGGGGCGGGCCGTGGGATT
TATTGGCGAAGGCAATAAACAAATTATGCTAATTCGGGAAAACTTTATTTCGACGGGGTC
TACATTCACGGTCAAAATGGGGGCTTAAATAAAAAACTTTACCAATGATGCCTTGAATTC
GenBank Accession BX285224 [GenBank]
Graphic View Graphic view of gene At4g33650
Predicted Position of Insertion Chr4:16165279 - go to primer design
BLAST e Value 2e-36
Hit Clone Code (BAC ID) T16L1
Hit Gene Code At4g33650 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation dynamin-related protein 3A
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit BX285225 [GenBank]

Gene hit At2g37080

 
Sequence (A. th genome BLAST matches underlined) 
>08-K013140-022-154-H01-8409
NTTTGATCCATGTAGAATTTCCCGGACATGAAGACCTTTACAATTGAATATATCATTTCT
GACTTTTCTTCAGAACACACCAATTTTCTTCAGCATACTTCCATTCTTCTTCTTTGGTGA
TGACAATTCATCATCAGTTTCACCCATATAAGGCGACATGTTGACGTTTCTCCTCCTCAA
CGGACTCTCTAACGATCCTGTTCTCTCCACGTACTTCCCGTTACTGTTATTGTTGTTGTT
ACCACCAGAGAGCATAGTAGCTGCGGCTTCAGCTGCTTTCCTCCATTGATCACACTGAAC
CTTGAGTCTCCTCAGCTCAACTTCTAGTTCGGTGTTGGTGACTTGTGCCGCCCCTATGGG
ATCCTCCCTA
GenBank Accession AL757985 [GenBank]
Graphic View Graphic view of gene At2g37080
Predicted Position of Insertion Chr2:15581564 - go to primer design
BLAST e Value 3e-165
Hit Clone Code (BAC ID) T2N18
Hit Gene Code At2g37080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ROP interactive partner 3
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37