SimpleSearch - Line and FST details
Line specific information
| Line ID | 156F09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N414949) |
| Segregation Analysis | 50:46:45 |
| Confirmed for Hit | At1g06450 At1g60987 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g06450
| Sequence (A. th genome BLAST matches underlined) | >70-K013211-022-156-F09-8409 NTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATGATGAACAC CAATATAATAAACTTGCAAGAAAATCTGAAGGTAGATGCAACCTTCTTGGTATACTTGTG TCTTATTCTCCCTTTTACCAAGCCCCATGAACAAGGAACTTCTAGTCCTCCAACCGATGT TACCATTGGGCTCATTGAATTTTGGTTGACCTAAACCACCCTGATGCAACTCTTCTACTT GTCGACGATCAATACTGTGAAGAATCATGGCCTGATTATTACTGCAGAGAGACCGCCATG GTGTTCGTCTGCAAAACTCATGTTCGATACTAATAGTTAATCGGCCGGTGGCGAAGAAAG TCTGTGGAATCCTCCCTNTTAGAGAAGATGGCTCGTATGGCCGAATGTCTCAAGCGATTC CCACTCATCGCTTTCGATACAGAGTACCCTGGCATTATTTTCCGCACTTATTTCGATTCC TCTATGGGATCCTCC |
| GenBank Accession | AL758216 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:1965655 - go to primer design |
| BLAST e Value | 7e-49 |
| Hit Clone Code (BAC ID) | F12K11 |
| Hit Gene Code | At1g06450 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Polynucleotidyl transferase, ribonuclease H-like superfamily protein |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g60987
| Sequence (A. th genome BLAST matches underlined) | >70-K013240-022-156-F09-8409 TTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAATTGAATATATGAAAAACAA AAAATATAAGAAACTTGCAAGAAAATATGAAGTTTGTTGCAATCTTCTTGGTTACTTGTG TCTTATTCTCCCTTTTCCAAGCCACCTGTCACAAGGTCTTCTAATCACTTCCACCGAAGT TACCATTTTGCTCATTGAAATTTGGTTGACCTAAACCAGTTTGATTTAACTCTTTTAGTT GTTGTTGATCAATTATGTGAAGAATCAAGGATGAATATTAATGCGGAGAGAAGGCCATGG TGTCCGTCTAAAATACAAATGTTTGATACTAATTGTGAAGTGGATGGAGCAAAACAATGC CTATGGGATCCTCCTATTAGGTGAAGATGGCTCGTATGGGCGAATGTCTCAAGCGATTCC CACTCATGGTTTTCCATACAGAATACCCTGGCATTATTTTCCGCACTTATTTCGATTCCA CTATGGGATCCCCC |
| GenBank Accession | AL758217 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:22460411 - go to primer design |
| BLAST e Value | 1e-152 |
| Hit Clone Code (BAC ID) | T7P1 |
| Hit Gene Code | At1g60987 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SCR-like 5 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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