SimpleSearch - Line and FST details
Line specific information
| Line ID | 166D07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N415883) |
| Segregation Analysis | 50:50:21 |
| Confirmed for Hit | At1g54390 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At4g06935
| Sequence (A. th genome BLAST matches underlined) | >52-K013366-022-166-D07-8409 CTGATCCATGTAGATTNTCCCGGACATGAACCACTTTACTATTGGATTATAGCACTAAAA GGGACTTTTGCAGTATTTTCAAAAACAATACACGATATTAATCTCGATTCCATTCTTTGA AAAACTACGAAAAACAAAACTATGGTACAATTAACATATACGGATGAACTGTTTAGCCCG CCTTTCGAGGTTGTACTACCCAACTCTCTCCTTAGCTTCCAAGATATTCTGCTCTCTCCT CGCCTCCACGGATCTTCACGATACCCCGTACCCGGAGACTATTAGGAAGCACCGAGAGTC GTCCTTATCTCTGTTTAATGTTCCATGGGAGCTCTAAGCCACGTTGGTTTACTCTGAACC GTGGATCCAACTCGAATCCCCAGCCCTATGGGATCCTTCCTTTATTGAGCANCGCACTGA CCATAGGCGAGACGGTGCTCACGTATTCACGCACCGTACCCGGGCCTGCCACCAGAAAAT TATGCAAATGGTTCTGCCCCTGTTACCCTCTTCATCAAAAAACACACTAATATCCATGGG TTCCTGACGAGAAGATTTTCGTTTTGCCATAAAGGATACACTGCCCCACTCCATCCCGCA ACTTACACGGCCTCCCTGTGACCCACTTTTGACCCCCCATTGTTAATCTGCCCGTTTCCG AATGAATTCACAATTAATCTAAGCTTGTCAATTCGCCACACCTTTTTGGCCCCCACTCCC TTCCCCGATCAAATAACCCCACACCCTCACTTTACCCTCGCTACCCGACACACGCTCCGG CCCCCAAACTAGCCCGGTAATCT |
| GenBank Accession | AL759185 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:10811892 - go to primer design |
| BLAST e Value | 8e-138 |
| Hit Clone Code (BAC ID) | F18F4 |
| Hit Gene Code | At4g06935 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | long noncoding RNA |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At1g54390
| Sequence (A. th genome BLAST matches underlined) | >52-K013361-022-166-D07-8409 CTGATCCATGTAGATTNTCCCGGACATGAAGTCCTTTACAATTGAATATGAATGGCAACA AAAATATTGATTATGGAGATAGACACTGGGATCGTGACACTGATTTTAGAGGCTATGCCT CCTTCACGAAGCAAACGGAAAGACCTTATGCCAATTGAAGAGCAGCCAATCGATCCAAAC GAACCAACTTACTGTGTCTGCCATCATGTCCTGAATACATAAATTTTGCAAAATCTGTAA GTTGCCTGATCCTGTTGTGATCTTTGGTTAACATTTTCGTTATTTGTTTCAGGTGTCCTT TGGAGACATGATTGCCTGTGACAATGAGAATGTGAGCCTGCTCTCCCAGCATCTTATTAT TTATTTTTTAATGTATAGCTGTTATGATGAAACCTTTTGTTCCTGTTTCGACAGTGCCAA GGAGGTGAATGGTTTCACTATACATGCGTTGGCCTCACACCTGAGACCAGATTCAAAGGG AAATGGTACTGCCCCACCTGCAGACTCCTCCCACAGTCACACTAATATCATTTGTACCTG TGAGAAGGTATTGCTTTCCTATCATCAGAACTAAGCTCTCCTTCTGCATTTCCCTGCGTT CTGTAGCTAATATAA |
| GenBank Accession | AL759184 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:20305526 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F20D21 |
| Hit Gene Code | At1g54390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | PHD finger protein-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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