SimpleSearch - Line and FST details
Line specific information
| Line ID | 169C08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N416160) |
| Segregation Analysis | 50:40:38 |
| Confirmed for Hit | At1g11360 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At5g40480
| Sequence (A. th genome BLAST matches underlined) | >59-K013387-022-169-C08-8409 GTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGTGGAAGCACAGTTGAG TATTGGCTTTTGAAAGAATAATCAATACCAGAAACGGTGGCTCGAACAGTGCACTGTCAA AACAGTATATGGTATATAGAAAACGATAATATTTTAACGTGGGAAGAATGAAATAATGAG GAGGGAATTGGTTAATATATTTACCAATCCTGATTCATTGCGTAGAGCCAGAAATCTCTC CCAGCCACACTTTGTCATTTTTGATTTATAATCATCGTCCCAGTATGCCAAATTGTTGCA ACTGGTCAATTCCCACCTGACAGAAAGAGTTGAGGAGTTTGAAAAAGCTTCTCCAAACTC GCTAATACCAACAGCAGCCACACGAATTATTTGCCCATTTGCCACAGTCACAGGAGTTAC ACGAAGTCGTCCTGGTGCCCTGTCAGCTTGACTATGGGATCCTCCCTATAGTGAGTCTTT TNACCTCAACCNTGATGCTTCGGATAAGCAGTAGCAGCAAGGTTGACTTTGAATGCATGT AAGTGTCAATTTACTTAGGAATATTATATACAAGTCGTAATACTCTGGGTTGGATCAGGG CTTGGACCTTTAGAATGATTGGATATTGGGAAGGATCCCCTAAGATGCTACTTTATCTCC TGATGCT |
| GenBank Accession | AL770238 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:16217871 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | K21I16 |
| Hit Gene Code | At5g40480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | embryo defective 3012 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g11360
| Sequence (A. th genome BLAST matches underlined) | >59-K013446-022-169-C08-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTTAAACTATCAGTGTTTGATTTGCACCCGGTGGAGCTTGCATGTTGGTTTCTACGCAG AACTGATCCGGTTAGGCGAATAATTTCCATTGAGAACTGAGCCATGTGCCGGCCAGCTTG GCCGCTGAAGAAACCGAGCGCCGCCGTCTAAAAAGGTGATGTGTATTTGAGTTAAACAGC TTGCGTCATGCGGGCGCTGCGTATATGATGCGATGAGTAAATAAACAAATACGCAAGGGG AACGCATGAAGGTTATCGCTGTACTTAACCTGAAAGGCGGGTCAGGCAAGACGACCATCG CAACCCATCTATGGGATCCTCCCTATAGTGAGCGTNTTAACTTCAANGCCNGCGACTCTT TNTATTTTTGGACTCTTTTCTTATGAGAATTTGATATTGTTAAGAACCGTTAGATTGATC GGGTTGAAAATCTAACGGGTGTAAAAATATATAACCCAAAACATAGATATTCTTCAATGG GACTATATAGTCATTCTAATCATGTAATAAAAACACACTATACCCAAACTAAAATAACTT |
| GenBank Accession | FR804914 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3822962 - go to primer design |
| BLAST e Value | 2e-67 |
| Hit Clone Code (BAC ID) | T23J18 |
| Hit Gene Code | At1g11360 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Adenine nucleotide alpha hydrolases-like superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR934846 [GenBank] CR934846 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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