SimpleSearch - Line and FST details


Line specific information

 
Line ID 170A04
Vector Used pAC161
Line Availability available as T3 set from NASC (N416228)
Segregation Analysis 50:47:37
Confirmed for Hit At3g18930
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit F21A14

 
Sequence (A. th genome BLAST matches underlined) 
>25-K013465-022-170-A04-8409
CTGATCCATGTAGATTTCCCCGACATGAAGCACTTTACACTTAGAATTTATACTTTCGGT
TAGTATGCTACGCAAGCGAGCGATGGTGCTGACTGCGGGGGACACCACCCACTATGGAGA
TGTGGTACAAGGCAGTACCATTTTGGAATCCTTTACCTAAGTTATACCATGCGCTACTGC
TCACAGACCTAGGGTTACACTCATGCCGTATGGGGGGATGCTATATATGAAGAGGGCTTC
TAGCTATCCGATCACCACTCATACGCCGAACGTTCAATTAACTCAAAATCATCAATCGTT
CCAACTAATCTACCGAAGTACTCGGCTAAGAAGAAAGAAGACGGACGAATCCGAGCCAAA
GCCGTACAAGCGCGAGATACCTTCGGGACAGCCTATGGGATCCTCCCTATAGTGAGGCCC
CCCGGCGACAGCCGCCGGCGAATTTCGTGCCCGCGCGTTGTTTCCTTTATTCGGGCTCCG
CCCCTTCCCTCCCGGCTATCGCGCCGCAAGCACTCTCCCCGCCACTCCTTCGGGTCACCC
GATACCAATTCCGCTCTTCCGCCCTGCCTATCCCGCCCCCCCCCGTGTCCCCTACCCCGG
TCTTGGCGCGATTCCCCGTAGCACCCACGCGGGCGGCCGGCCTTTCTTCCGTTCCCCTCC
CGGCCTGTTTTTTTCCTCTCGCCCCCGCCCCGCACCCTTTCGCGCCCCCCCCGTATTTGC
GCTGCCTCTCTCGATTCGATTTTCTTCCGCTTCCTCCGCGTATTCCCCCTCCGCCGCCGC
CGCTCA
GenBank Accession AL770281 [GenBank]
Graphic View Graphic view of sequence AL770281 of line 170A04
Predicted Position of Insertion Chr3:14197434 - go to primer design
BLAST e Value 7e-83
Hit Clone Code (BAC ID) F21A14
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At3g18930

 
Sequence (A. th genome BLAST matches underlined) 
>25-K013467-022-170-A04-8409
CTGATCCATGTAGATGTTCCCGGACATGAAGCACTTTACAATACTATATTTGACGTGCTG
ACCTAATACACTAGAGCGATTATTATAATAATGCCATGTCTTAAAAGGCACTAAAAGGCT
CATTCGTGAGTCCATGGGTATGTGCTTGCCTTTCACAGGGTTTCTCTCGGGAGTGCTCGT
CATTGCCGCGCGATAATGAGTACGGTTCAGCCACCCAAACGTCCGAGATCTCTGACGACG
GAGCACCGTTCCAAAATGATCCCTGTGGCTCGTATGGATCGGATATGGAATTCTGCATTC
ATTTGAGCCCTGCAATGGGATCCTCCCTTAGATGAGGTTCGCCGGGATGAGGCTTCCGTC
GCTGGAATCCGTTCTGATATCGGGTAAAACACTCCCGCCGATGATCTCCGTCGGAAGAAC
GGTGATTTCGGGCTTNTGGCGCAACGGAACGATAACACTCTTGAT
GenBank Accession AL770282 [GenBank]
Graphic View Graphic view of gene At3g18930
Predicted Position of Insertion Chr3:6523965 - go to primer design
BLAST e Value 2e-43
Hit Clone Code (BAC ID) K13E13
Hit Gene Code At3g18930 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37