SimpleSearch - Line and FST details


Line specific information

 
Line ID 175G01
Vector Used pAC161
Line Availability available as T3 set from NASC (N416777)
Segregation Analysis 50:47:42
Confirmed for Hit At1g53420
Parent of DUPLO pair none
Parent of pair(s) 405, 4560

Gene hit At1g51400

 
Sequence (A. th genome BLAST matches underlined) 
>07-K013532-022-175-G01-8409
CTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACAATTGAATATATCCAATTTTG
ACAGATAAAGCTGACGTTTACAGCTTTGGTATAGTAGCCCTATGGGATCCTCCCTATAGT
GAANNNNAAATCAGCAAAAACTTCTACTTAACTTTGTGCAACAAATCTTTACCCTTTCAG
CTACACTTGGTGAACGCTCACTAGAAGCCATATAAGTATATAACCGTAAAAATTTCAATT
ATTGGGTTATATGAGACAACTCCATGTTTTCCAGTAGTCTATAGTTCTCCGAGGCTTCCA
GGTTCAGGAGAAGACAAAACTAATGTACCCCTATGGGATCCTCCCTATAGTGA
GenBank Accession AL770905 [GenBank]
Graphic View Graphic view of gene At1g51400
Predicted Position of Insertion Chr1:19052099 - go to primer design
BLAST e Value 1e-105
Hit Clone Code (BAC ID) F11M15
Hit Gene Code At1g51400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Photosystem II 5 kD protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At1g53420

 
Sequence (A. th genome BLAST matches underlined) 
>07-K013517-022-175-G01-8409
NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTGACAATTGAACTATATCTCAATTT
TGACAGATAAAGCTGACGTTCTACAGCTTTGGTATAGTAACTCTATGGGATCCTCCCTAT
AGTGACGAATCTCACATGACATATAAACTTTTATCTTTGAATATTGATTTTGTGACTTAC
AATGTTCCATCGATTAAAGTGCTATTGAGACTGCTGTCCTCTTCATCAAGCTTGGCAAGA
CCAAAGGCTGATATTTACAGATCCACTTGTTTGTCTAGCAACACATTATTGGCTTTGATG
TCTCTGTGTACAAACTATAACCTCGATGCTTCGTGTAGATATGCTAT
GenBank Accession AL770904 [GenBank]
Graphic View Graphic view of gene At1g53420
Predicted Position of Insertion Chr1:19927176 - go to primer design
BLAST e Value 6e-80
Hit Clone Code (BAC ID) F12M16
Hit Gene Code At1g53420 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat transmembrane protein kinase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37