SimpleSearch - Line and FST details
Line specific information
| Line ID | 176A06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N416806) |
| Segregation Analysis | 50:33:28 |
| Confirmed for Hit | At5g39050 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4586, 4663, 7338, 8492, 10044, 93041, 93043, 93046, 93047, 93048, 93049, 93050, 93051 |
Gene hit MGI19
| Sequence (A. th genome BLAST matches underlined) | >41-K013533-022-176-A06-8409 NTTTGATCCATGTAGATTTCCCTGGACTGAAAGCCTTTACAATTGAATATATCCTGTAGA TTTCTCGGGCGTAAGAGTTGTTACTACACATTCTCTCCCCAATATTTAAGATCATCAATA TTACGTGACAAAAACCAGGAGACTTGTTATTCTGTGAGACTTGACTCTTCTGCAGAATCA TTTTCTGCTCTTTCCTTCTGAAGAAACTTATGGCACATGATGGCACCAACAAAATCAAGC ATTCCATGTTTCACAAGCTCCAGCCGCTCCGAACTGTTCATTACAGAGAACCCAAACCGC TCAGTCCAAGTGGTCACAACCTCTTTTGCAGCCGGTAAGACCAGTCTACAAACTCCCATC TGAGACATTTGCTTCTCCAACTCATCCATCAGCACTCTGCACATCCCACTTCTTCTGTAA CTAGACAATGTCGCCACCAAAGGGATCTCGACTACATCTTTGTCAACTCTCACTGCTGCC ACCGTGATAGGCCTCGCTCTTTCTCTCGATCAAGACTGTGTAAAACCCGCGGCCCACTCC AGTTCTGTCTTTCCTGTATATCAGGCCCCTAACAAGGTCTCTCCCAGAGCAAACATCATT GGTACGCTCAAACCCTTGGTGAAGTATCTTGCCAGCAGATTTTAACTTGGAGATTGGTTC ATCATCATAGGGTTCACCTTGGTTGGGAGCCTCTCATAAATGCCCAGACCAAATTACCGG GGGTGCCTACTGCAATTTTACTCCCTA |
| GenBank Accession | AL770940 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:25570461 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MGI19 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At5g39050
| Sequence (A. th genome BLAST matches underlined) | >41-K013518-022-176-A06-8409 NTGATCCATTGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGTTGCC GGGAACACAGGTTTTGTCTGTTGCCGGGTCGACCCGGTTCGGAGTTTACGGGTTGGATTT TGGGTGGGGTAGACCGGAGAAAGTGGTGGTTGTGTCAATTAGACCAAGGTGAAGCGATTT CTTTTGCGGAGAGTAGAGATGGGAGTGGTGGTGTAGAGCTTGACTTCTCCCTCAAAAAAC ATGAAATGGATGTTCTTGATGATTTGCTTCACAAGGGGCTATGAGTATCCTACCTTCAGN GCCGTNTCATCCCAAGAGGACACAACCTCTTTAGCTACCTGTATTACGGGGCTATCGACT CCCATCTGAGACATTTGCTTCTCCGGATCCTCCATATCCACTCTGCACATNCCACTTCTT CTGTA |
| GenBank Accession | AL770939 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:15635775 - go to primer design |
| BLAST e Value | 9e-107 |
| Hit Clone Code (BAC ID) | MXF12 |
| Hit Gene Code | At5g39050 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | HXXXD-type acyl-transferase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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