SimpleSearch - Line and FST details
Line specific information
| Line ID | 180B08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N417204) |
| Segregation Analysis | 50:38:31 |
| Confirmed for Hit | At4g36170 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At4g36170
| Sequence (A. th genome BLAST matches underlined) | >58-K013602-022-180-B08-8409 CTGATCCATGTAGAATTTCCCGGACATGAAGCACTTGCTNGATCATATTATTCCCTCATT TTTCACTTACAAAGTACCAAGTCATTATTATTTTCACCTTAACGGCCAACACAACAAGTG AAGAAGACAAACAGCAAGTTTCACCTTAAAATCTCACCATTTATAGAAGAATTAATAACA ATTTCACCATAACAAATTCGACTTTTGTTTTAATGGATTCCGTCGGCATGCCAATACCAA TAGAACATGACTCAAGCAAGAACTATAAATAATTACTTTATATATTCATCTATCGAGATT ATTATAATAATGTGTTTTTTCGTATTTAGATCCCTACAATCATTATTTCTATTTATCAAT ATGCAAAATGAATTATGTGTCTCATACCGTACGAAGTTTAATATATATTTTAGAAAAAAA CAACATTTGATATCTAAAAAAAAATGTGAAGACACAAAAAATCAACCCAATATTTATAGA TAAAGGTTACAAATGAGATTAACTTATTATTGAAAAGAGACATATGCTCTTTCCTAATGT AACAGCCTAACAGAATAACAAGATAATCCCTATGGGATCCTC |
| GenBank Accession | AL771432 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:17116814 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F23E13 |
| Hit Gene Code | At4g36170 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g22260
| Sequence (A. th genome BLAST matches underlined) | >58-K013611-022-180-B08-8409 TTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACTCTTTACTTATATCCTTACAA CCATAATATGATCTCTTAAGCAACATAAGGGATATTCCCTCATCGAAAGTACTGGATTTG TTGAGAATAGAATCTTGTTTTTTTTACTGTGTATATCACTAATTATGGATCTGAATACCA AACGAAAAGTTGTTCCCAGGCTATGGGATCCTCCCTATAGAGAGCATCCGCATGCCAATA CGTAATATACAAATCACACTTGGAAGGGGTGGACAATTACCTATGGGATCCTCCCTATAG GGAAGCCAACNAAGCGGTATGGTTGGCATGAATACCCCTACCTTCCTTATGGGATCCTCC CTATAGGGAAGAAGAACCATGCGCCTCATACTGTACGACCCCTAACTTATCTTTTACAAA GAGACAATATCTGATCCCTAAAAAACGTCGCGCCGACACACAAAAAAACCCCCATCTCCA TGGATAGAGGTTACCCAACGCGACTAACTCCCCCATTAAAAAAAAACAATTGCTCTTACC TATACGGCCCGGCCTATCCCAATACCCCAGATCAATTCCTCGGGGGCCCCCTCTCACCCG CGGGCCCATTCCCGTTCACATCCCACACCCCCCCGCTCCACGATGCGCACTCAACAATCC CCGCGCTTCCTATGCATATCCCGCCCCCGAGGATTTGTCAATGTGCGCGACAACGGCGCG ACCGCAAGCGGCCACCCCACGCCAAATACTTTACAACCGCTTGGCCACCAATCGTGCGCA ACACCACAAAAATTTTCGCGCGCGAAACGGCCCCCCCCGCCCCACGGGCCGACATTATTC ATTTCTTACCGCTATCCCCCACGGGGATTTCCCGACAAGCCCCGCGTAGAGGCGCACTCT CTCCGCGCCCATAGTTGTGACTGCCGGCACGCTCTCCCCACGCGATCCCCATTCGTCCTC TTCCCCCTTT |
| GenBank Accession | AL771433 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:11771453 - go to primer design |
| BLAST e Value | 2e-15 |
| Hit Clone Code (BAC ID) | T10I14 |
| Hit Gene Code | At4g22260 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Alternative oxidase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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