SimpleSearch - Line and FST details


Line specific information

 
Line ID 182H05
Vector Used pAC161
Line Availability available as T3 set from NASC (N417465)
Segregation Analysis 50:45:42
Confirmed for Hit At3g47110
Parent of DUPLO pair none
Parent of pair(s) 3343, 9671, 90859, 90862

Gene hit At2g20440

 
Sequence (A. th genome BLAST matches underlined) 
>40-K013594-022-182-H05-8409
TTGATCCATGTAGAATTTCCCGGACATGAANGCCTTTACAATTGAATATATTCAAGAAAA
TTTCTGGCCGGCAATGAACAATCTTCTGATCAAAAACTGTATTAGTATATGTTTGATATA
TAAAGTCGTCGAGTAGAAGTTTTGAGCAAATCTTTATTGCTTATTACTATTCGCCTGCAA
GAAACACACAACAACACCATCTGCATTAGTATAACTGTATATCATATTATATCTTCCCCA
AGTTATAGTGATAGTGAAAGAAACCTTTTTCAGGAATTTTTCATGGATCTTCAACGCTTC
TTTACATGCTTTTTTGGCGTCAAGATTACCCGCAATGTCTCCTATGGGATCCTC
GenBank Accession AL771746 [GenBank]
Graphic View Graphic view of gene At2g20440
Predicted Position of Insertion Chr2:8810931 - go to primer design
BLAST e Value 7e-163
Hit Clone Code (BAC ID) F11A3
Hit Gene Code At2g20440 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ypt/Rab-GAP domain of gyp1p superfamily protein
Insertion Classification TS2TE (3')
Confirmation Status unknown

Gene hit At3g47110

 
Sequence (A. th genome BLAST matches underlined) 
>40-K013613-022-182-H05-8409
NTTTGATCCATGTAGATTTCCCGGNACATGAAGCCTCGGCAGTCGTAAGTAAAGCTAGTA
ATAACTTATCTTTTATAAAACGATGTCATTGGGGAGAAAGACCGATCATTCTCATTATTA
TTAGCTCTGACACTCTTCACTCTCAGTTTGTACCGGCATAGATAAACCACACACAGACAT
AGAAGCAAAAGTGCTGCCATAACTGCACTGACACAAATGGTGATTATCTTTCTGACTGAT
GAATGCCTTCTTGGTAATTCAACAGAGCATGGCTGAAGCTGTAATGACGGGATGCCTCCA
CAGAGGTTTATGTTACCAAAGACCGACATCGCACTGGTATTACGAAATACCCCTTCCGTT
GGCACAGCTCCGTCGAAGTTGTTCAAAGAGAGATTCAGGTTCTGCAGTTTGGAAAAGTTC
GCCATATATTCAGGTATTGTACCAGAGAGATTATTCTTCGACAGATCTATGAGATTGAGG
CATTNCCAACNTCTTATATTTGGAATGGGCCCAACCAATGAATTCCCTTGCCACAAAAAG
AATCCTAGTGAGA
GenBank Accession AL771747 [GenBank]
Graphic View Graphic view of gene At3g47110
Predicted Position of Insertion Chr3:17348168 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F13I12
Hit Gene Code At3g47110 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit HG968804 [GenBank]


Last Updated on 10.06.2021 13:37