SimpleSearch - Line and FST details
Line specific information
| Line ID | 193A08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N418440) |
| Segregation Analysis | 100:93:83 |
| Confirmed for Hit | At2g18480 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 730, 3749, 11180, 78465, 78467 |
| Note |
Gene hit At2g36060
| Sequence (A. th genome BLAST matches underlined) | >41-K020163-022-193-A08t-8409 AGAATCATGACTCTTGGCTCAGGATCGAGTGTTGTCGGTAAATTTTCGATTTTTTTTTTT TGGGTCCCTTTTAAATTTCCCTTGGGAACCCCC |
| GenBank Accession | BX530818 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:15144131 - go to primer design |
| BLAST e Value | 8e-18 |
| Hit Clone Code (BAC ID) | F11F19 |
| Hit Gene Code | At2g36060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | MMS ZWEI homologue 3 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 191D05 |
Gene hit F21A14
| Sequence (A. th genome BLAST matches underlined) | >57-K014650-022-193-A08-8409 NTGATCCATGTAGCATTTCCCGGACATGAANGCCTTTACAACCGAGGAATCGTCCACCAC GACGGTAGACTGGTCGATTGAACATCTATCGGGTTCGAGGAATGGTCGACCAGGGGTTGA AATCGTCGACCGGGTCCGAGACTTCATCGACCGTGACCGAGGATTGGTCGACCATGATTT GAAATCATCGACCGGGACCGAGAATTCGTCGACCAGGACGGCGGAATGCTCGACCAGGAC GATGAATGGGCGATGAAAATCTATCGGGTTATAGGAATGGTCGACCAGAAGTTGGAATCG TCGACCGGGTCCGAGAATTCGTCGACCAGGACCAGGAGTGGTCGAGGATTTGTCGACCGG GAGTTGAAATCGTCGACCGGGTCCGAGAATTCGTCGACCAAGACGGCGGAACCCTCGACC AGGACGATGAATGGGCGATGAAAATCTATCGGGTTCGAGGAATGGTCCGACCAGAAGTTG AAATGGTCGACCGGGTCCAAGAATTCGTCGACCAGGCCCAGGAGTGGTCGAGGATTTGCC GACCAGGAGTTGACATCGTCCACCGGGCGCGGAGATTTCGTGGACCAGGACGGGGGGACC CT |
| GenBank Accession | AL760023 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:14192114 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F21A14 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At2g18480
| Sequence (A. th genome BLAST matches underlined) | >57-K014649-022-193-A08-8409 TTTTGATCCATGTAGATTTCCCGGACGTGAAGCACTTTACAATCGATCTTGCTCGCGGCC GTTGGGATACACTTTTTCGAGCATGCGACGGGGATTGAGGCCGTCGTGCTGTACAGCCCG AGAATTTTCAAGAAAGCCGGAGTTGTTTCGAAAGACAAGCTCTTGCTATGGGATCCTCCC TATAGAGAGACCGGCACCGAGAATTCGTCTACCACGACGGTGGAATGCTCGACCAGGACG ACGAATGGGCGATGAAAATCTATC |
| GenBank Accession | AL760022 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:8010272 - go to primer design |
| BLAST e Value | 3e-54 |
| Hit Clone Code (BAC ID) | T30D6 |
| Hit Gene Code | At2g18480 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Major facilitator superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR396308 [GenBank] |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
