SimpleSearch - Line and FST details


Line specific information

 
Line ID 196B10
Vector Used pAC161
Line Availability available as T3 set from NASC (N418742)
Segregation Analysis 50:29:18
Confirmed for Hit At5g53200
Parent of DUPLO pair none
Parent of pair(s) 2771, 95979

Gene hit F3M18

 
Sequence (A. th genome BLAST matches underlined) 
>74-K114416-0022-196-B10-8409
GCCTTTTGATGTTTCCTTCCTATGGCTAATTAACTAATCTGCACGGCCACTATTTGTTTA
TTGCTTTCGCCTATAAATACGACGGATCGTAATTTGTCGTTTTATCAAAATGTACTTTCA
TTTTATAATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTC
TTTCTTTTTCTCCATATTGACCATCATACTCATTGCTGATCCATGTANATTTCCCGGACA
TGAAGCCATTTAAAAATGTTTCCTTCCATATGGCTATTTATCTAACCTGCCCGGCCACTA
AAANNTNNNNNNNNNNNCNNNGGNGTCAAAANNNANNATANNNNTNGNNNNNNNNGNNNN
NGNNNNTNNNNNNNCNNNNNNNNNNTNGNNNNNNNGTTTTTGGGGGGTTATTCGNGGGGC
TTAAAANAAAAAAAAAATNNAAGGAAGTGTAGTATATTGTTTGGGCACACCGAGATTGGG
AACAGAGATATAAAAAGTCTATAATTATATTGTAGGAATATATATTATAATGAGTTTGTG
GATGGTAGTAATGATAGTAGAGCAAAGCGAGATTATAAAATTGAGTTAATGTTATTAATT
AGGAAAAAAAAGTAAAAGATAGCTGGTGTTTGATATCCGTAATAACAGATATTAATTATA
GCGTATGTGGGTTAGTTTTGAGAGGATATATTGCGTATTAGATTTTCACCGGTGAATTAT
AGAGATTTAGATGTACATTTTTCCGAGTTAGGTCACTAGATGTCGTTTAACTGATAAATT
AATTAAAGAATGGATTGATCGTGATCTGGTATTAATTTAAGGGAACTAATTGATGGATAT
GTTATGTAGCGATATACAAGGAAATTGTGATGTATTGATAGATTGGATAGTATCAGTGAG
ATAAGGTATAATTATCCAGGACGATGGTAGTTAGCTATGTTAAGCGAAGTGATTGATTAT
GTGTAGATACGTAATTAGTGTAGGTTTGTGATTGCATAAGCTTATCCTCTAAATAACAAG
TGTAGTTTATTGCAACTTGATGACTTGGCATGGTAGATTATATAATACATGAGTGGTAAG
TGTTAACTATTATATGGGAGAAGAGATCGATGAATATCTGGCAAGGCACTGTGTAAATGT
GTATGATGGCAGAGATTGAT
GenBank Accession HE664293 [GenBank]
Graphic View Graphic view of sequence HE664293 of line 196B10
Predicted Position of Insertion Chr1:9996313 - go to primer design
BLAST e Value 4e-05
Hit Clone Code (BAC ID) F3M18
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g53200

 
Sequence (A. th genome BLAST matches underlined) 
>74-K014718-022-196-B10-8409
GATAATGAGAAACAGTGAACGCTTTGCTGATAAACACGCCAGCTTCACTCTCTTCCCCAA
ACTACCAAGCCTCACCGTCCTCGCTTTTCTATCTATCCTTCCTATAGAATCCTCC
GenBank Accession AL760318 [GenBank]
Graphic View Graphic view of gene At5g53200
Predicted Position of Insertion Chr5:21583852 - go to primer design
BLAST e Value 9e-33
Hit Clone Code (BAC ID) MFH8
Hit Gene Code At5g53200 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Homeodomain-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL760317 [GenBank] AL760318 [GenBank]


Last Updated on 10.06.2021 13:37