SimpleSearch - Line and FST details
Line specific information
| Line ID | 200G06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N419182) |
| Segregation Analysis | 50:32:20 |
| Confirmed for Hit | At2g33490 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At1g66740
| Sequence (A. th genome BLAST matches underlined) | >47-K028790-022-200-G06-8409 CTTCTGCTGAGACTACATAGATAGGCTTCCATTCCAAATCTGTATGGGATCCTCCCTATA GTGAGACGTATTGG |
| GenBank Accession | CR934932 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:24893104 - go to primer design |
| BLAST e Value | 2e-11 |
| Hit Clone Code (BAC ID) | F4N21 |
| Hit Gene Code | At1g66740 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ASF1 like histone chaperone |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 200G05 |
Gene hit At2g33490
| Sequence (A. th genome BLAST matches underlined) | >47-K014483-022-200-G06-8409 TAAATTGCAAGGTTCCCTATGGGATGCTGACTATAGTGAGAGTCCGCGAGTTTCAAGTGG GGATGAATACCAAATCTGCTTTGTAATTGCCTTTGTAGGATTAAGATGACCCCACGTTTT TGTGACCTGGACTTGTAGTAGATGAGGGACTTCTCGTTGTTTCCACAGGAGTTGGCAATG CATAAGTGTTGAATTTCCGTGTCACAGTTGATCGCATCCGTAACAGCTTTTCTGAAGGAA GAGTTGGGCGGTTCTCGGGAAAAAGTGGTGCTGATTGCGTCACTGCCCTTACTTCTCTCC TAAACCAATGAGACTTTTTGGGATTTCCTTCCTCATTTT |
| GenBank Accession | AL760662 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:14186847 - go to primer design |
| BLAST e Value | 1e-136 |
| Hit Clone Code (BAC ID) | F4P9 |
| Hit Gene Code | At2g33490 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hydroxyproline-rich glycoprotein family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g27831
| Sequence (A. th genome BLAST matches underlined) | >47-K028833-022-200-G06-8409 ATTGAATATATTCAGTTAGTAGATATTAATAATTATACCATATTATTCATCCACAATTAA CCCACAAAGTATGGGATCCTCCCTATAGTGAGACGAATTAGTCACTCCCTTTGAATTGTG ATATTAAGTAGTTATCAGGAGACATAAAATAATATACATAGTGATATTGCGTTGTTACCA GCTGCAAGAGATTCTTGTCGAGTGAATTTTCTTTTTCTTTTGCCTTTATGTCTAAACGAG TAACGACTTTTTTTCTAATATTACAACAATCTTTGGAAAACGATAGGTGAAGTATGGGAT CCTCCCTATAGTGAGACNNANNNNNCATTTTCNTAAANAAAAGAANAAGCGAGNAGGGAC GGAAGATAAGACAAACAGAGAGAAGCTATAGGAAAAATAGAATTAGAATAAAAAGAGGGG AAGTAATGAGAGTTGGGTGATAAAAAGAATTTTGTAAATGTGGAGGCAGTGAGAACTTTT ACAAAGAGAGAGTGAATGGTAGGTTGTACAAGTGGGAAGTAAAGAAATATATTAATGAAT TATTGATATAGTTAAAGATAAATGAAGAATGGAATGAATGAGAAA |
| GenBank Accession | CR934933 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:10319922 - go to primer design |
| BLAST e Value | 4e-68 |
| Hit Clone Code (BAC ID) | K16N12 |
| Hit Gene Code | At3g27831 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Gamma-thionin family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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