SimpleSearch - Line and FST details


Line specific information

 
Line ID 203A02
Vector Used pAC161
Line Availability available as T3 set from NASC (N419394)
Segregation Analysis 50:43:40
Confirmed for Hit At5g51060
Parent of DUPLO pair none
Parent of pair(s) 5481, 5489, 5495, 5518, 5519, 5545, 10406

Gene hit F14M19

 
Sequence (A. th genome BLAST matches underlined) 
>09-K014506-022-203-A02-8409
TTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTAGAAATTACTACTGGGT
GTAACTGGATTGGGTTTTATATGCAGTATCTATTGGGATCCTTCATAATACGGTAGACTA
TCTATCTCTGGCAGCCTATATATAGAGAAGACACTCACTCAATCAAAAATCGACTGAGTT
TCTAATGTTAAAGGAGTATTTATTTTTGTAATTCAGTTAACACTTCTAATCATTTTCATG
AAAAGCTTTAAACATATGCTTTTATTTTTCAACAAACATATTACAAAAGCTATTAAGTTA
ATCTTCAAAGTTATTAAGCTAATAACTTATAAACGATATTTTACACATAATAATGTTAGT
TGTAGTTAGACTAACCATGACTTAATCACCCAAAGAGAAAACAATTCTATGGGATCCTCC
ATATAGNNNGAGNNGNNNCCTNNNACCTGAGACGTGTGGAGTTTNATCTTGATCCCTTAT
ATTAAAACAATTTCTCATCTGATTAAAACAGATTTTTGTTTACTTGCTAAGGGGGCCTAT
TCTCATAAATCTTCCTTTTGGAATACCTTTTTCCGGCAGGATATTCTTATGATTTATA
GenBank Accession AL760815 [GenBank]
Graphic View Graphic view of sequence AL760815 of line 203A02
Predicted Position of Insertion Chr4:13154334 - go to primer design
BLAST e Value 3e-137
Hit Clone Code (BAC ID) F14M19
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g51060

 
Sequence (A. th genome BLAST matches underlined) 
>09-K014507-022-203-A02-8409
TTGATCCATGTAGATTTCCCGGACATTTTGGCATGTGAACAATCAAACCAAGATTAAGTA
GAAGTAAATGAATTGAAAAATCATATGCCTAACGAAACATATTAATTTGGCATGTGAACG
CTTGCAAGTATATTCGTACACCTATGGGATCCTCCCTATAGTGAGANNNNNNNNNNNNNG
NNNNNNNNNNNTNNNTTTTNNNTANNAANNNNTCGGTNCCCCTNNTTTTTNTNANNNTNT
NTTTNTTTTTTCTTTTTNTNNTANNNGGACCTTTATCAANTACTATTATATTAATATTTA
AATTTATCATNATTCAAACTCTTTTTT
GenBank Accession AL760816 [GenBank]
Graphic View Graphic view of gene At5g51060
Predicted Position of Insertion Chr5:20758683 - go to primer design
BLAST e Value 7e-55
Hit Clone Code (BAC ID) K3K7
Hit Gene Code At5g51060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NADPH/respiratory burst oxidase protein D
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37