SimpleSearch - Line and FST details


Line specific information

 
Line ID 209A01
Vector Used pAC161
Line Availability available as T3 set from NASC (N419969)
Segregation Analysis 41:42:32
Confirmed for Hit At2g02710
Parent of DUPLO pair none
Parent of pair(s) 5028, 5065, 5080, 7467, 8582, 81229, 81232

Gene hit At1g03920

 
Sequence (A. th genome BLAST matches underlined) 
>01-K014556-022-209-A01-8409
CTGATCCATGTAGGATTTCCCGGACATGAANGCCTTTACAATTGAAGCTATGGGATCCTA
CCTATCGCGAGTTCCATTTGGTAAATCTTTTCCCATTGTACACCTTCGAACCAGGATGTG
CCTGCATGTGACATTTTGTGGTTTGGATCAACTCGACTTATGACATTTGTGGGCTTAAAT
CTTTTCAACTTTTAACTATATATTGTAACTTTTACTATAGAAGAAAAAAGGAGAAAGATA
CCTTAATTTGGGAGGCACCAGTAGAGCCTATGGGATCCTCCCTATAGTGAGAGAGCTCAC
CAATGACATTTTTTGCCGTTTATGATTAACTA
GenBank Accession AL766260 [GenBank]
Graphic View Graphic view of gene At1g03920
Predicted Position of Insertion Chr1:1003452 - go to primer design
BLAST e Value 2e-104
Hit Clone Code (BAC ID) F21M11
Hit Gene Code At1g03920 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein kinase family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g02710

 
Sequence (A. th genome BLAST matches underlined) 
>01-K014557-022-209-A01-8409
GTGATCCATGTAGAATTTCCCGGACATGAAGCACTTTACAAATCGTCGTTGACCTCAGGA
ATGAACGCAGCTTCCATTTGGTAAATCTTTTCCCATTGTACACCTTCGAACCAAGGATGT
GCCTGCATGTGACATTTTGTGGTTTGGATCAACTCGACTTATGACATTTGTGGGCTTAAA
TCTTTTCAACTTTTAACTATATATTGTAACTTTTACTATAGAAGAAAAAAGGAGAAAGAT
ACCTTAATTTGGGAGGCACCAGTAGAGCCTATGGGATCCTCCCTTAGGTGAGANAAAATG
TTTTGAAGAANTAAATCTTCAACCTGTAATTTAATATTTGCACTGTGCATGATTGTCCCT
TTAAGATGCATTCCTTCATCTGAACCAAATAAAACATTCACAATTATCAATCATGCCATA
TACTAATTAACAAGTTAAAACGCAATCTCTACCTCGTATAGTACTGAGGAATCAGTATCA
ACCCCACTCAGAAATCTACAGTTTTGTCCCAACACTTCCTGTCTCTTGTAACCTACAAAC
ATTGATATAAATAACAACTGTGACCCAAATCTAATACCGGTAACTTTATTTCTTCAAACC
TA
GenBank Accession AL766261 [GenBank]
Graphic View Graphic view of gene At2g02710
Predicted Position of Insertion Chr2:758984 - go to primer design
BLAST e Value 3e-162
Hit Clone Code (BAC ID) T20F6
Hit Gene Code At2g02710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PAS/LOV protein B
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37