SimpleSearch - Line and FST details


Line specific information

 
Line ID 210H03
Vector Used pAC161
Line Availability available as T3 set from NASC (N420151)
Segregation Analysis 50:32:12
Confirmed for Hit At1g66500
Parent of DUPLO pair 11809
Parent of pair(s) none

Gene hit At2g38810

 
Sequence (A. th genome BLAST matches underlined) 
>24-K014131-022-210-H03-8409
ACGAAGTGTGTAAAGATATCTAAATATAAATATGAACATGTTGACCCAAAAAATGAAGAA
TTATAACAATTTAGAAAAGCCGGCCCAACAAGATCCACAAGAGCTAAACAAAATCCGGCC
CAACAATAAGTCCAAACTTTAAAAGCTCTCCCGCACAATTTTCGAGCATCCCGCTCTCGT
TTTCAGGTACTTCCCTCTCTGAGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL766440 [GenBank]
Graphic View Graphic view of gene At2g38810
Predicted Position of Insertion Chr2:16221119 - go to primer design
BLAST e Value 8e-101
Hit Clone Code (BAC ID) F13I13
Hit Gene Code At2g38810 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation histone H2A 8
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At1g66500

 
Sequence (A. th genome BLAST matches underlined) 
>24-K014135-022-210-H03-8409
NTTTGATCCATGTAGAATTTCCCGTACATGAAGCACTTTACAATTGAATATATCCTGTCA
AGAATACAGAGACTTAATCACAGATTCATGTCGAACATTAAGTGACGATGGATTATCAAA
GCTTAATCCAACAGGCAAAGAATCACTATTACTTGCTTCTAAAGTTTTCTTCTCTTTCTC
ATTGTTAAGAAGACTAAGCAAATCAGTCAATTCTTTGCTCAAAACAATTGGTTGATGCAT
AGATTGAGACACAACTGAAACCATGTTCGAATGATTCATCGGATTTTGAACATTCGTAAA
AACAGGAGTGTTTGGTACAAAATTCGATGACCTAACAGGATAATTCGGAGTTAGGGTTCT
TGAATTCGGAACCCAATCAGGTAACGAATCTAAAGAGAGATTGTCATCAAGCTTACGATA
AGGTAATGGAAGAGGAACACTTTGGGGATTACGGTTTCCATAACCGGCAACAGAGGGTTT
CTGGATATTGTTGGTGGTAGAATACTTGTCACGTACTGCACAACTGGAAT
GenBank Accession AL766441 [GenBank]
Graphic View Graphic view of gene At1g66500
Predicted Position of Insertion Chr1:24811761 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F28G11
Hit Gene Code At1g66500 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pre-mRNA cleavage complex II
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37