SimpleSearch - Line and FST details


Line specific information

 
Line ID 214D09
Vector Used pAC161
Line Availability available as T3 set from NASC (N420493)
Segregation Analysis 100:96:85
Confirmed for Hit At3g12100
Parent of DUPLO pair none
Parent of pair(s) 4429, 4437, 4607, 7314, 92978

Gene hit At4g38190

 
Sequence (A. th genome BLAST matches underlined) 
>68-K014139-022-214-D09-8409
TTGATCCATTGTAGATTTCCCGGACATGTAGCACTTTACATGAAGCCTTTTACAGTTGGA
TCACCTCCGCTCTCCCTCATCTGTTTTAGAGCTTTCATTTCCTCCCTTGCATTAAATGCA
TCTGACCTCCTCCGTATTGAGTCAGGGAGGCCGTTGATGCGAACCTTGAATTCATCATAC
TCCCTCTTAATCTTTCTTCTGTCCTTGACAAAATCAATTCTGCTCTTATTCTTTGTTGGA
TCTATCTTCAAACTGAAATACGAGTCTGGATTTCGAGGCTCAATGTTATGTTTGCGACAA
AAAGGTACCCAGAGATCCGCAAAGCTATGGGATCCT
GenBank Accession AL766878 [GenBank]
Graphic View Graphic view of gene At4g38190
Predicted Position of Insertion Chr4:17912035 - go to primer design
BLAST e Value 1e-152
Hit Clone Code (BAC ID) F20D10
Hit Gene Code At4g38190 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cellulose synthase like D4
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g12100

 
Sequence (A. th genome BLAST matches underlined) 
>68-K014143-022-214-D09-8409
NTGATCCATGGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATATATCCTGAGCGA
GAGGAGCCAAGATGCCAGTATCAAACCTGCACTGAAAAGACAGCAGCAAAGAAAACTTCA
TGTTGACTGTATATAAGTTTGATGCAAAAGGAAGCATTTTCTTTTCTATATAGCTTTCTC
CGATTCTGCTTGAAATTTATAAAGGCAGAGAGGATTAACACCTGCGGATGGAATCTGATA
TGACGTGCAAGCAAACGGAGTGATAATTCATATCTTCTGCTTTTCTGTAGGCTGCAGCAT
ATTGCATATTATGAATATAAGAAAAAAATTCAAGATAACATGTGGTTTTTAGATATGTAA
AGAAGGGACAGATAATTTCAAGAAGCAACGAATAGTCGTTTGACAGATCAGTTACAATTA
TGCTGACTCTCTCTTTCAACTAATCTTCGTACTGATTCTATCTTAACCAAACACCCTTAC
TTCTTTGGCTTTAAAGCGAAAACTGACAAGGGTGGCCAATTTCTACAAATGAATACCAAA
GCCACCAACANAGGCTATATCAAAATATAAAGCAGCGTATGAGCATCAATCCATACAAGT
CTAAACAGAACTTAAAATGCAGAGAAAAACATACCCATATTGACACGAGCATAATTCCGG
AAAAACCAAACACCTA
GenBank Accession BX890883 [GenBank]
Graphic View Graphic view of gene At3g12100
Predicted Position of Insertion Chr3:3855365 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T21B14
Hit Gene Code At3g12100 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cation efflux family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37