SimpleSearch - Line and FST details


Line specific information

 
Line ID 220D11
Vector Used pAC161
Line Availability available as T3 set from NASC (N421071)
Segregation Analysis 100:74:55
Confirmed for Hit At1g05717
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At1g05717

 
Sequence (A. th genome BLAST matches underlined) 
>84-K014205-022-220-D11-8409
NTTTGATCCATGTAGATTNTCCCGGACATGAANGCCTTTACAATTGAATATATTCACGTA
AACTCATATAAAGTTATCAAACTGATAAAAGTTAGCGTCTTTGATGCTGAAACAGCATAT
GAGTATCTCGTAATCTCATCACCGCTTATCCAGAGAGATTTTGATGAAAAAAGAAGAGCA
AACTTAAGAAATCTCCAAAACGATATACAACGAAACGAGGCATATGGGATCCTGCCTATA
GCGAGAGACAAAAGTGGGAACATGAGAGTACAACAACAAAAGAGAAACAGAGTTGGATCA
CAAATCATCGAGGAAATGTCTTAAATCACCTGAAACACACATAAATAGACAACATCAATA
GATAATGCAGTAACAGATCTCTTTAGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL767587 [GenBank]
Graphic View Graphic view of gene At1g05717
Predicted Position of Insertion Chr1:7814667 - go to primer design
BLAST e Value 2e-76
Hit Clone Code (BAC ID) F2E2
Hit Gene Code At1g05717 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation zinc finger CCCH domain protein
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences

Gene hit At2g07717

 
Sequence (A. th genome BLAST matches underlined) 
>84-K014203-022-220-D11-8409
NTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAATTGAATATATTCACTAAAC
TCATAAAAGTTATCAAACTCATAAAAGTTAGCGTCTTTGATGCTTAAACAGCATATGAGT
ATCTCGTAATCTCATCACCGTTTATCCAAAGATTTTGATGAAAAAAGAAGAGCAAACTTA
AGAAATCTCCAAAACGATATACAACGAAACGAGGCTATGGGATCCGTCCTATACGGGGGC
TACCCCTGCGGATTTACATAAATCCTCCACAGCGGCGAAGGTAGATGCATGAGTTACAGC
TGGAGTGATGACATGCTTAAAGATTGAGTCAGCTGCTTTCGCACGCCCATAGTCTAATAT
GCCAATCACCTATGGGATCCTTCCTATGGTGAGGGAGAGCANCTTGTTGGGTTAAAAACT
TTTTTTGTTGCTAAATGTTACAGCCTAGATGCTGAACTATTGACTCTACTCGTTCGGATG
GGTGTTCACCCCAAAGTGTTCCCGGACTGCATGCATACATCCGTAAGTAACTTACTGCAA
CATGGCAAATCTCATTGAGAGGAATCAGCAAAGAAAAGAAACACGGGTCAACATCTTAAT
GTGTATTTGAGGATATTTTAGGGCCCTA
GenBank Accession AL767586 [GenBank]
Graphic View Graphic view of gene At2g07717
Predicted Position of Insertion Chr2:3425643 - go to primer design
BLAST e Value 3e-103
Hit Clone Code (BAC ID) T18C6
Hit Gene Code At2g07717 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation  
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37