SimpleSearch - Line and FST details


Line specific information

 
Line ID 259D10
Vector Used pAC161
Line Availability available as T3 set from NASC (N424814)
Segregation Analysis 50:37:26
Confirmed for Hit At5g13400
Parent of DUPLO pair none
Parent of pair(s) 87571, 87574, 87577, 87578, 87581, 87583

Gene hit At1g09480

 
Sequence (A. th genome BLAST matches underlined) 
>76-K014916-022-259-D10-8409
NTGATCCATGTNGAATTTCCCGGACATGAAGCACTTTTCTTCGGCTGTGCGCTGGCCAGA
CAGTTATGCACAGGCCAGGCGGGTTTTAAGAGTTTTAATAAGTTTTAAAGAGTTTTAGGC
GGAAAAATCGCCTTTTTTCTCTTTTATATCAGTCACTTACATGTGTGACCGGTTCCCAAT
GTACGGCTTTGGGTTCCCAATGTACGGGTTCCGGTTCCCAATGTACGGCTTTGGGTTCCC
AATGTACGTGCTATCCACAGGAAAGAGACCTTTTCGACCTTTTTCCCCTGCTATGGGATC
CTCCCTTTAGGTGAGANANACATCATTCTTTTGCAAAGTATAGAAAGACTGTCATTATTA
TGGATCATTACGAGTAGACAACTAAACCAAATCGGAATCTATGGGATCCT
GenBank Accession AL941618 [GenBank]
Graphic View Graphic view of gene At1g09480
Predicted Position of Insertion Chr1:3058690 - go to primer design
BLAST e Value 1e-31
Hit Clone Code (BAC ID) F14J9
Hit Gene Code At1g09480 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAD(P)-binding Rossmann-fold superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g13400

 
Sequence (A. th genome BLAST matches underlined) 
>76-K014923-022-259-D10-8409
NTGATCCATGTAGATTTCCCGGACATGAANGCCTTTTCTTTGGCTGTGCGCTGGCCTCAC
AGTTATGCACAGGCCATGCGGGTTTTAACGAGTTTTAATACGTTTTAAAGAGTTTTATGC
GGAAAAAACACCTTTTTTCTCTTTTATATCAGTCACTTACATGTGTGACCGGCTCCCAAA
GGACGGCTTTGGGTTCCCAATGTTCGGATTCCGGTTCCCAATGTACGGCTTTGGGTTCCC
AATGTACGGGCTATACACAGGAAAGAAACCTTCGCGACCTTTCTCCCGCCCTATGGGACC
CTCCCTTAGTAGAGAAACACATTATGCTTTGGCAGAGTAAGGACAGAGCTGTCTCTTTAT
GGATCATGACCAGTCTGCAGCTAAAACCAATCGCGACCTATGGGATTCTACCTTTTGTTA
GACTTCTTCTATCTATCCGCCCACCTATGCGCAATCATTGCCTTCACTTTGGTGCGCTAT
GTTCAAATGGAACCCTGGTTGGGGTATGGGCTTTTGCCCATTGGCCCCACCCATGGGGAT
TTGTAATG
GenBank Accession FR806692 [GenBank]
Graphic View Graphic view of gene At5g13400
Predicted Position of Insertion Chr5:4298094 - go to primer design
BLAST e Value 4e-16
Hit Clone Code (BAC ID) T22N19
Hit Gene Code At5g13400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Major facilitator superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37