SimpleSearch - Line and FST details
Line specific information
| Line ID | 261F08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N425028) |
| Segregation Analysis | 50:20:15 |
| Confirmed for Hit | At2g14700 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At5g08230
| Sequence (A. th genome BLAST matches underlined) | >62-K014925-022-261-F08-8409 TTGATCCATGGTAGATTTCCCGGACAATGAACACCTCTAACAACACGCTAATAATCCTAA AACGAACTGACTCATACTAAACCAAAAAACCCTATAACACCTAGGATGCAACTTCCTATT TGAACAGACGAGGCTTTGGGATCCATACCTGTAATGGGGCGTCGTCCCTTATGTCGGAGG CGATATTACATACATCCACTTGCCTTGAAGATGAGGATGGAAGGATTTCTTTTTCTCCGA TGCTCCTCGAGGGTGGGAAGACCAATAAACACAACTGAGGTTATACTCAAAGCTGCTACG GGAGCCTCCCTGTCGTGGGAATAGACCAAAAGAGCGTACACGTCAGCTGACAAGTTCACA AAAGTGTCCCTTGACACTTCAACATCCAGACGAGTTGCAACTTTCGGAGTGCTATGGGAT CCTCCCTA |
| GenBank Accession | AL941887 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:2646806 - go to primer design |
| BLAST e Value | 9e-36 |
| Hit Clone Code (BAC ID) | T22D6 |
| Hit Gene Code | At5g08230 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | tudor/PWWP/MBT domain protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At2g14700
| Sequence (A. th genome BLAST matches underlined) | >62-K014950-022-261-F08-8409 GATTTCCCGGAAAAAACACCTCTAAAAACCTAAAAACAAAAACGAACTGACTCATACTAA ACCAAAAAACCCTAAAACACCTATGGGATCCTCTCTATAGTGAGANNNNNNCNNNNNNNN NNNTNNNNNNNNNNNNNTNNNNNAANNNNNNGGGNGNNTNNGNTNNTGGNGGNNNNCNGG GGGTGCGGGGGGGGGGGGCTTGTCCCGTTTNTTGTCTTTTGTGTTGTGGTGGGGTGGGGT GTGGTTGGGGGCGGGCCGGGGGTGGCGTGGGGTTCGTTGCGGGCTCTTCGGCGCTCCCCT GCCCCCGCCTCTTTTCCCCCTCTCCCCTCCGTCTGTTGTGCTTCGTTGCCGCTGGGGTTC ACGCGTCGGGCGGCCGTCGTCGCGGCGGGGTTCTCGTAGTTGGGGGGCGGCGGTGGGTTG TGGTGCGCCTCCCCGTCGGTCCCCTCCTGCGCGCGTGGCCCTGCCGGGGTCTTCTGGGCG GCCGGCGGTTGCGCTGGTCGGCTTGACTGGGCGAGGGGCCCGGTCATGCTCCGACCCCGC GCCCGTAACTTTGACGGGAGGGCCCGGAGTACGCCTGCGCCCATGTGGAAAAGTCTGCCC GCCGCACCAGTCTCTCACAGACGCCCGCTCTGTGTGTTTACGCGCCTCGCGGAGACATAT TCGCGCAGCCGGATTGTCTATTTTTGCCACCTCCCACGGACGAGGGATGCGGCGGGTTGT CTCGCTGACCGTTGTTCTAAAAAACGTGCAGCCACGCCGGGGGGCCAAGAGTTTTGTATT TGATTTGGTTAGCGTTGTTA |
| GenBank Accession | AL941888 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:6294513 - go to primer design |
| BLAST e Value | 2e-19 |
| Hit Clone Code (BAC ID) | T6B13 |
| Hit Gene Code | At2g14700 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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