SimpleSearch - Line and FST details


Line specific information

 
Line ID 262G07
Vector Used pAC161
Line Availability available as T3 set from NASC (N425135)
Segregation Analysis 51:22:22
Confirmed for Hit At5g57090
Parent of DUPLO pair none
Parent of pair(s) 4529, 4623, 4685, 4694

Gene hit F3I6

 
Sequence (A. th genome BLAST matches underlined) 
>55-K014926-022-262-G07-8409
TTGATCCATGTAGAATTTCCCNGACATGAAAGCATGTACATCTGAATATACTGGTTACTC
AATGGTACCCTCGCTATAGCTAAGACCCGGATTGCCATGAGAAGCACCATCCGTGTTGAG
TTTACACCATCCCAAGCTATGGGATCCTCCCTATAGTGAGACANNNCTNNNTNGNNATTG
AATTCANCANGTCTTTTACTGAAGCGAAATTGCAAAATTAAACCCGATTTTGTGTTTCTA
TTTTTTTTTACGTTCTTCGACGAAACTTGTTTACCGGTCAACTCCATCATTCCCAACCAA
ACCGTTTTCTTCATCAAGGCGGATGTGCCTGCTTCTTCTTAAACAAATTAGTAAACTTTC
TTCGCCGCCTCTCGATCCTCAGAAATT
GenBank Accession AL942033 [GenBank]
Graphic View Graphic view of sequence AL942033 of line 262G07
Predicted Position of Insertion Chr1:8548785 - go to primer design
BLAST e Value 3e-60
Hit Clone Code (BAC ID) F3I6
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g57090

 
Sequence (A. th genome BLAST matches underlined) 
>75-K021646-0022-262-G07C-8409
AGCATTTACATTGGTGGTTATATTCTTTGGCGAAACAAAAGGAACGATTCCTTGAGGAAG
AGCAGCCTTCAAAACATACAATTATATATATTCTTATCAATTATATTTTTCAAAGAAACC
CAACATCACTAGCTAAAACATCAAACTGTAAGTTAGATTGAAATATATATAAGACTAAAG
AGTAATCACCTGAACGATGGCGATATGGAGGAGATCACCTCGAATACCAATTGCTATTGA
GGTGGCTGCGATCACGGCTGGTCCAGTCAAGAACCTTACGGCCATCGCAAACCCTGCTAC
TGATTTTCCGCACGCAATAATCTTTGGTTGCAATGCCATAAATAGACCTATATGTATCAA
TAATTAGCAAAAAAAAAAGCACCAAAGACTATAACTAAATATATATATGAAGGGAACTAT
ACCAAGACTAAACATAGCCTTTCCAAGACCAGCATCA
GenBank Accession HE664365 [GenBank]
Graphic View Graphic view of gene At5g57090
Predicted Position of Insertion Chr5:23104223 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MUL3
Hit Gene Code At5g57090 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Auxin efflux carrier family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37