SimpleSearch - Line and FST details
Line specific information
| Line ID | 265D03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N425383) |
| Segregation Analysis | 50:25:21 |
| Confirmed for Hit | At5g07760 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g17040
| Sequence (A. th genome BLAST matches underlined) | >20-K014998-022-265-D03-8409 GAGTGATTAATGCGTTTTCTTCTCTCATCCATTTTGCTTCCGCAATACTTCCTATGGGAT CCTCCCTATAGTGAGATTATAATCCTGAAAAATGCAACAAAAACCAAAATAAATAAAATA AGCAATTTAAGATCTTCAATTTGATCTCTCTTTGCTTCAACAAAAACTAAATTTTTTCAC TTCCTCACTCACCTTCCAAGCCGAGATAGCTCAGGTTCCGCCAAAAGCATATCTTGCAAC TGTTTTGCATCTGTATACCTTTCACTATGGGATCCTCCCTATAGGGAGANACACGCACGT ATAACTATACCAATTATCTAAATTTGCTCCCCACACATAATTATCGATTACCCACACCAA TAATATGCCATAAAGATAAATCCAAGACCGTAATTATATTTAAATCATAAACAAACGATA CAATACACTAAAAATAAAAAGTAAACACACTTAAACAAAAGTAAGAGAACAGAAAAAGAA AAAAAGAAAAAAGAAAAAAGAAACAGGAAAACAAAACACAATGAAGAAAACAAAAATATA CCAAAAAAAAAATAAAGAGAGGATACAAGACATTATATACAGAACCACTTTTAAAATAAA AAAATGAAACAATAAACAACCAAAAAAAACACATAAAGCACCCACAAAAAAACCCGAAAT TACGAAAGATACAACGAAATATACCTGGCACCTGATAAAACGTACACTCTAATCAGCGGA TAAAAGAGGTATAGACAAAACCATAATATACCGCATGATATTCAGATAACAAAATAGAAA CAAATAAATACATAAATACGACCAAAGTTAATAATCAGAACAATATCACACA |
| GenBank Accession | AL942362 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:5828149 - go to primer design |
| BLAST e Value | 4e-78 |
| Hit Clone Code (BAC ID) | F6I1 |
| Hit Gene Code | At1g17040 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SH2 domain protein A |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At5g07760
| Sequence (A. th genome BLAST matches underlined) | >20-K014990-022-265-D03-8409 TTTGATCCATGTAGAATTTCCCGGACATGAAAGCCTTTACATTTGAATATATCCTGTGAC AGAGATGGTAAGCATATTGTTAAGAACTATATTTTGGTGGAAAATAAAAACAGTGTGAGA TTGGTAATCTAAAGACTTAAAGACAGACCTGCTCACACTTTCCCAAGGTTGCCTTGTCAC CAGTATAGTTCTACAACAAACCAATCAATTACGACCAAGAATAATGACTCGTGTCAACTA ACAAGTGAATAATGATAACCAAGAATTGACAAAAGTAAAGACAGAAGTTGATAGTGCTAC TCAAAAGTCAAGAGGTAACCTTAAGAAGCTTCATCTCCTCCTTTGTTGGGCAAAACCTTA TAAGATTCTCTATTTGATCAACATCTATGGGATCCTCCCATTAAGGGAAGANNNNNNTNN NNNNNGCGNCGGNCCCNNGGGAGGGGGGCACCCACCGTGCGCACCCGCACGAGGGAGAGC CGCGGCGACGGGCCCCCCCGCCACAAGCGGGCGAAGCAGGAGCGGCGGAGCGAGTCGAAA GGCCCGGCACCGCGGCGGGCGGACGCCCCGCCCCCCGCGGGGACCGGGGGGGCGCGCAGG GGCCCCCGCCCGGACCGGNGCAAGGCCGGGGAACCAAGACCCAGACGCCAGNGAGCGCNC GCCACCAACAGCCGCAAGACCCACCCGGACCCGAGCGCCCGAAAGGACCGCCACGACCGC CCGACACAACAACGNAGAGCGCGCGGGCGAAGACCGCGCGCCGAGCACCCGAGGGAGGCC GGGGCGAGCCCGCAGAACGCCGGACGAACAACCCCCGCCGACACGGAGAAGGGAGGANGG ACACAAGAACAGACGACGGGAGAAAGGAAGGGAGAAGAACC |
| GenBank Accession | AL942361 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:2471824 - go to primer design |
| BLAST e Value | 1e-170 |
| Hit Clone Code (BAC ID) | MBK20 |
| Hit Gene Code | At5g07760 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | formin homology 2 domain-containing protein / FH2 domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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