SimpleSearch - Line and FST details
Line specific information
| Line ID | 271A03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N425923) |
| Segregation Analysis | 50:41:27 |
| Confirmed for Hit | At1g19500 |
| Parent of DUPLO pair | 12379 |
| Parent of pair(s) | none |
Gene hit At1g19500
| Sequence (A. th genome BLAST matches underlined) | >17-K015071-022-271-A03-8409 TATCATGAAATTTCCCGGACTGAAGCATTTACAATTGAATATATCCTGAAGAAAGATAAC AAATCATATATTAAGGAGGGATTATGGAAATTGATTATTAAAACAAAATTGGTGCTTACA GTTGATAAAATCATAAAAATTTAATGTTTAACCTATGGGATCTCCCCTATAGTGAGATTC CTCTTATCATACCGCATAATTCTCAAGAAATATATGTGCGACAACGTTTACTTTCACAAG GATGTGGCCATTATCATACATTACTATGGGATCCTCCCTATAGTGAGATGAANGCTTTT |
| GenBank Accession | AL943019 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:6754973 - go to primer design |
| BLAST e Value | 4e-56 |
| Hit Clone Code (BAC ID) | F18O14 |
| Hit Gene Code | At1g19500 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit F28N5
| Sequence (A. th genome BLAST matches underlined) | >17-K015064-022-271-A03-8409 TTGATCCATGGTAGATTTCCCGGGACATGAAGCCTTTACAATTGAACAAAAGAATAGCAT GTACTTCCGGACATGTGTATGGGATCCTACCCTATAGTGAGAATTCCAAAGAGAATCCTG GTCTACTGGGGGGCTGGCTATGGGATGCTCCCTATAGTGAGNGNNNNNCCNTNNGTNCTT CACAATGACACGAATGTGACCCCGTTATCATTCCTTGGCGGGTGAAGATTCATTTGCGGG TTAAGTTCTTATACTCAAGCATACGCATGCCATCATGTCATATTCGACTCCAAGACACTA ACCAAGCTTCTTCTATGGGATCCTGCCTATAGAGAGATNNATACGCGGACCTCAAGAATC ACTGCGGTGATGCTTTTCTATGATCCCGCTAAACCCTGCCATTACCTGCC |
| GenBank Accession | AL943018 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:11701799 - go to primer design |
| BLAST e Value | 1e-25 |
| Hit Clone Code (BAC ID) | F28N5 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
