SimpleSearch - Line and FST details


Line specific information

 
Line ID 271F04
Vector Used pAC161
Line Availability available as T3 set from NASC (N425984)
Segregation Analysis 50:14:12
Confirmed for Hit At1g33080
Parent of DUPLO pair none
Parent of pair(s) 4770, 4788, 4847, 4857, 10093, 86166, 86231, 86235, 86239, 86240, 86241

Gene hit At3g58490

 
Sequence (A. th genome BLAST matches underlined) 
>30-K015071-022-271-F04-8409
TTTCCCGGACTGAAGACTTTACAATAGATATGTCCTGATCCTCTCAGCGTATCACCGTCG
CACTGTTTGAGAAGGGTCTCCGTCACGACCACCTTCTCTGCGCGCCATAGCTGAAGATAA
AATGAATACAAGAGCCTATGAAGGGCTGGACCAAGGAAAGCATAAAGTTCGCGCGGGCTG
TTTATGAACGGACGACGGAAAAGAAAAGCCGGCCTACCCCGCTTTGTAAGATTCTTGATT
TTGACAAACTGAAATTATATAGGCCTCATGATTACTCCTCCCATGTAGGCTCTAGGTAGG
AGCACAATATTACAGAATTGCATTGTACTTTAGACGTTGCCTACCAACTTATACGTGTGT
GATTAACTTGGTGAAACACTAAGGGATCTCCCTCCTAGTGAGAAATGGGCATACCATGCA
TCGGAATATGGGATGCCTGCTGCACATACACCGACCACGGGTGTTTAACAGAGGATGACC
CCTGCTATCTCGTTGCCATCCTCCNTGATGGAATAGCATCATAGGTGGAGAAACTCCATA
CCTA
GenBank Accession FR806954 [GenBank]
Graphic View Graphic view of gene At3g58490
Predicted Position of Insertion Chr3:21633424 - go to primer design
BLAST e Value 4e-04
Hit Clone Code (BAC ID) F14P22
Hit Gene Code At3g58490 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Phosphatidic acid phosphatase (PAP2) family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At1g33080

 
Sequence (A. th genome BLAST matches underlined) 
>30-K015064-022-271-F04-8409
NTGATCCATGTAGATTNTCCCGGACCATGAAGCCTTTACAATTGAATATATCCTGATCTT
CTCCGCGATTCTCCGTCGACTTTTTCAGAAGGGTCTCCGTCACTTCTCCTTCTCTTCTCG
CCATAGCTTAGGAGAGAATGAAGAGAGAGTAGAGAAGGCATGGAGCGAGGAGAGATTTTT
GTTTGGTGGGTTGTTTATTTACGTACGGAGGAAATGAAAAGCCGGCCTACACCTCTTTTT
AAGATTCTTTAATTTGCCAAATTGGTATTTTATATGCAAAATGAATACTTTTCATAAATA
AATTTTAAATAAAATTTAAAATTTGTCAAAATTACATTTACATTTATACATTGCATACCG
AAAAAGACATAGCTATGGGATCCTCCC
GenBank Accession AL943097 [GenBank]
Graphic View Graphic view of gene At1g33080
Predicted Position of Insertion Chr1:11985817 - go to primer design
BLAST e Value 2e-39
Hit Clone Code (BAC ID) F9L11
Hit Gene Code At1g33080 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MATE efflux family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37