SimpleSearch - Line and FST details


Line specific information

 
Line ID 272G04
Vector Used pAC161
Line Availability available as T3 set from NASC (N426092)
Segregation Analysis 50:49:39
Confirmed for Hit At5g45960
Parent of DUPLO pair none
Parent of pair(s) 79362
Note

Gene hit At5g45960

 
Sequence (A. th genome BLAST matches underlined) 
>31-K015096-022-272-G04-8409
NTGATCCATGTAGATTNTCCTGGACAGTGAAGCCTTTACAATTGAAAACAGATAAAGTAT
TTTATTTGTTGCAGTTGATAGATTAGTCGCCACTATGGGATCCTCCCTATAGTGAGAGGG
GNAAAGCACTACTCGTATGCCCTGGGGACCATGTGACCGCGTTATGGGCGCGTGGTCTTC
AAGGACTGATCCGAGAAGATTTCTATATGCTACCGTGCCAAGGGAAGAGATGATGACCCA
AAGACAATCCGATACACCTTATAGAGATGGGTCTCGTCATAGACGCCGCCATGAT
GenBank Accession AL943234 [GenBank]
Graphic View Graphic view of gene At5g45960
Predicted Position of Insertion Chr5:18639201 - go to primer design
BLAST e Value 5e-19
Hit Clone Code (BAC ID) K15I22
Hit Gene Code At5g45960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GDSL-like Lipase/Acylhydrolase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g02120

 
Sequence (A. th genome BLAST matches underlined) 
>31-K015091-022-272-G04-8409
GATCATGTAGATTTCCNGGACATGAAGCATTTACAATTGTAACATATAAAGTATTTATAT
GTGTTGCAGCTGATAAGATTAGTCGCTGCTATGGGATTCTCCCTATACGATGAGACGGGG
AAAATACTCACTGTTATTACTCCGTGAACTTGTGACCGCATCAAGGATGGATGGTCGCGC
AATGACTCTAACCCAGAAGCGATCTATATGCTATCGGACAAATGAAAGATATTTCGATCC
AATGACAAAGGGATACACGCTATTGAGATGGGTTTCGTCCTTGACGGCGCCATGATGCTA
TGGGATCCTCCCNNATAATGAGANACNANCTCATTATTTTCCTTTGTAGAGTGAGTTAAC
GAANAACTCTTGATATGAACAATCTTTATCTTCAGAAATCACTTCAGGATCTAGCTTGTG
GCTACACTGGTCTCTTTCTCCGATGCATTCATATTTCGCCACGTGGTATATCCTGCAACA
CATCTTTCCTTGTTTTGCTA
GenBank Accession AL943233 [GenBank]
Graphic View Graphic view of gene At5g02120
Predicted Position of Insertion Chr5:419419 - go to primer design
BLAST e Value 3e-66
Hit Clone Code (BAC ID) T7H20
Hit Gene Code At5g02120 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation one helix protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 362D02


Last Updated on 10.06.2021 13:37