SimpleSearch - Line and FST details
Line specific information
| Line ID | 280B04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N426800) |
| Segregation Analysis | 50:39:35 |
| Confirmed for Hit | At3g04660 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 95052, 95053 |
Gene hit F24O1
| Sequence (A. th genome BLAST matches underlined) | >26-K015176-022-280-B04-8409 TTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACAATTGAATACTACTCCTGCTA TGGGATCCTCTCTCATATGAGAGAACAGGGGAAGGAAGTCTCAGAGACCTCACATAAAAA AGGAGCTGAATACGACCCGAGTGCGATTCTTCCTCTGGAACTGAAAATAGAGATTCTCAT GAAGGCACCGCCGAAATCCATAGCCCAGCTATGGGATCCTCCCTTNAGCGAGCTATCCCC ATCCCATCATTGAAATTATTAATTCCCACACTCTCGTGATTGTAGATTCATCATGGCGAC CAAGTTAAGCGGCTAATTAATTGGGATCCTCCAAGGGGGGGGTTACACGTTGATGTGCTC CGAGTATTTAAACGAAAAGATGAAAATGGTTTATTTTTTCTATGGGATCCTCC |
| GenBank Accession | AL944179 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:23075543 - go to primer design |
| BLAST e Value | 1e-38 |
| Hit Clone Code (BAC ID) | F24O1 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At3g04660
| Sequence (A. th genome BLAST matches underlined) | >26-K015176-022-280-B04-8409 TTGATCCATGTAGATTNTCCCGGACATGAAGCACTTTACAATTGAATACTACTCCTGCTA TGGGATCCTCTCTCATATGAGAGAACAGGGGAAGGAAGTCTCAGAGACCTCACATAAAAA AGGAGCTGAATACGACCCGAGTGCGATTCTTCCTCTGGAACTGAAAATAGAGATTCTCAT GAAGGCACCGCCGAAATCCATAGCCCAGCTATGGGATCCTCCCTTNAGCGAGCTATCCCC ATCCCATCATTGAAATTATTAATTCCCACACTCTCGTGATTGTAGATTCATCATGGCGAC CAAGTTAAGCGGCTAATTAATTGGGATCCTCCAAGGGGGGGGTTACACGTTGATGTGCTC CGAGTATTTAAACGAAAAGATGAAAATGGTTTATTTTTTCTATGGGATCCTCC |
| GenBank Accession | AL944179 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:1264773 - go to primer design |
| BLAST e Value | 6e-37 |
| Hit Clone Code (BAC ID) | F7O18 |
| Hit Gene Code | At3g04660 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | F-box and associated interaction domains-containing protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g31425
| Sequence (A. th genome BLAST matches underlined) | >26-K015200-022-280-B04-8409 CTGATCATGTAGATTTCCCGGACTGAAGCACTTAAATTGAAATATCCTGATATCTGATAT CCGCAAAGGTTAATGACACGCTTGGAAAGATCGGATCGCTCTATGCAGGAAAAATACGAG AGCGCGGGCACTATGGGATCCTCCCTATAGTGAGANNCNNNNNTAACNTTNGTCTAAAAT GACTATTCCCAATGAGGAATATAAGAGGATAATCACTTACTGATATGCTAGAAAGCGTGG TAGACGTTCAACA |
| GenBank Accession | AL944180 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr2:13395283 - go to primer design |
| BLAST e Value | 1e-19 |
| Hit Clone Code (BAC ID) | T28P16 |
| Hit Gene Code | At2g31425 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Plant invertase/pectin methylesterase inhibitor superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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