SimpleSearch - Line and FST details


Line specific information

 
Line ID 281D11
Vector Used pAC161
Line Availability available as T3 set from NASC (N426927)
Segregation Analysis 50:50:49
Confirmed for Hit At4g40050
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At5g56040

 
Sequence (A. th genome BLAST matches underlined) 
>84-K015201-022-281-D11-8409
CTGATCCATGTAGCATTTCCCGGNACATGAAGCCTTTACAATTGAATATATCCTTGCTCT
TCGGTTTGATGTGATCCTATATCCTCATATATAAATAATAGACATGGCCCAGACTGCACA
TGGCAGGAATTACGTTGAAACGCCCACTACATCCGTACCTATGGATACTCTCACTTATTA
TCGAGTTCCTCTCCCTCTTCACCAATGCCACGTAACCCTATGGGATCCTCCCTATAGTGA
G
GenBank Accession AL944355 [GenBank]
Graphic View Graphic view of gene At5g56040
Predicted Position of Insertion Chr5:22694904 - go to primer design
BLAST e Value 1e-10
Hit Clone Code (BAC ID) MDA7
Hit Gene Code At5g56040 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich receptor-like protein kinase family protein
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At4g40050

 
Sequence (A. th genome BLAST matches underlined) 
>84-K015199-022-281-D11-8409
NTGATCCATGTAGATTTCCCGTACGTACTTTACTTTATACTAATATTAGTAAACCCTTTA
CTTAGCTTCTATGCCACGTTTCTGCTTGATTACTTAGATTGCCAGAACGGAACCAAATGC
TCTTGCAATTATCTGACAATCTTAGGCTTTGGCTTGATCACAGACTAACCTATTACAGGA
GACTTTATATCTGACCTTGGTCAGTGATTGATATCGACAAATAAACACCTCTTTATACGT
ATGATTTGTAATCTCTCTGATACACTCTTCTGCTACTGCCGGATCTGGAAATCTATATAT
CGAGTGCTATGGGATCCTCCCTATAGTGAGNNNNNNNNN
GenBank Accession FR807146 [GenBank]
Graphic View Graphic view of gene At4g40050
Predicted Position of Insertion Chr4:18563360 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) T5J17
Hit Gene Code At4g40050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation signal transducer, putative (DUF3550/UPF0682)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37