SimpleSearch - Line and FST details


Line specific information

 
Line ID 281G07
Vector Used pAC161
Line Availability available as T3 set from NASC (N426959)
Segregation Analysis 50:46:34
Confirmed for Hit At5g39570
Parent of DUPLO pair none
Parent of pair(s) 9881, 10861, 10863, 11195, 84569, 84573, 84576

Gene hit At1g29460

 
Sequence (A. th genome BLAST matches underlined) 
>55-K015199-022-281-G07-8409
TTGATCCATGTACGATTATCCCGGACATGAAGCTATGGGCATCCTGCCCTATAGTGAGCA
CGCTGAGGAGAAGGGCTGTTCCGTGGTTTACACGGTTGATAAAGTTCGGTTTGCTTTTCC
GTTAAGTCACTTGAACAACTCTGTTTTCGAAGAGCTCTTGAAGATATCTGAAGAAGAGTT
CGGCCTCAGGGCGGGTGGACCAATCACGTTGCCGTTCGACTCGGTTTTCTTGGAGTATCT
CATCAAATTTATCGAACGAAGAATGGATGGAGATACAGAGAAAGCTCTTTTAATGTCAAT
CTCTATGGGATCCTCCCTTCAGTG
GenBank Accession AL944401 [GenBank]
Graphic View Graphic view of gene At1g29460
Predicted Position of Insertion Chr1:10307923 - go to primer design
BLAST e Value 1e-118
Hit Clone Code (BAC ID) F15D2
Hit Gene Code At1g29460 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SAUR-like auxin-responsive protein family
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g39570

 
Sequence (A. th genome BLAST matches underlined) 
>55-K015201-022-281-G07-8409
CTGATCCATGGTAGATTTCCCGGACATGAAGCACTTTACAGTTGAACATCTTGATAATTA
GCAGGTGTGTATGCTGTACAACTCGTCGTGTTTATAACTCGCGCGGTTTTTGCGTCTTGC
GAGATGTAGACAGTGGGTCGTGTGTCGTCCTGTCTGATCCTAGACTGGAAGCCGGGAGTA
GTATGACGAACACAGAGAAGCTTCTTCTTATGCGATGCCGGACTATACCAGAGATGACGA
CGACGGCGACGATGCCGATGAGTTTGATCCAGCGGCGTACAGTGGTGGTTACGACATCAC
GGGGATCTACGGCCGTCCGATTCCACCTTCCGATGAGACTTGTTATCCTCTCTCATCTGG
TGTCGATGATGATTTCGAATACGAGAGACCTGAATTTACTCAGATCCATGAGCCTTCTGC
TTACGGTGATGAAGCTCTTAACACAGAGTACAGTAGCTATTCTCGACCCAAGCCACGACC
CGCATTTCGACCCGATTCAGGTGGGTGGTGGTCATGTTCAAGGTGAAAGACCAAATCCTG
GTTATGGATCTGAATCCGGATATGGGAGGAAACCGGAATCTGAGTACGGATCTGGCTATG
GTGGACAAACGGAGGTGGAGTA
GenBank Accession AL944402 [GenBank]
Graphic View Graphic view of gene At5g39570
Predicted Position of Insertion Chr5:15843865 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MIJ24
Hit Gene Code At5g39570 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37