SimpleSearch - Line and FST details
Line specific information
| Line ID | 287A07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N427463) |
| Segregation Analysis | 100:100:80 |
| Confirmed for Hit | At1g11100 |
| Parent of DUPLO pair | 11818 |
| Parent of pair(s) | none |
Gene hit At4g15420
| Sequence (A. th genome BLAST matches underlined) | >49-K015292-022-287-A07-8409 NTTTTGATCCATTGTAGATTTCCCGGAGCATGAAGCCTTTACAATTGAATATATCCGGAC ATATCTACTCGCGGTTAGTGCGAAGAGGATCATCTTTTCCTTGATGTTGTACCTCGCAAC AGAATCACCGTCTGATGATAATCCACACCTCCTATGGGATCCTGCCATATGGTGAGAGAT TATGGGGTTCTGCCTACCACTTGTGGTGACAATTTCCATCATACTAGGAGATACGTGCTA TAGAGAGATATGGGGAGAGAGCTATTTTCATAACGTGCCACTGGATGGAACGAATATATA TTTGGCATGGGAGCTTGGATGGATCTCATTCTATGGACCCTCCTCTCTCATAGGGAGGGG GTCCTTCCTAGGGACAGCTGTTGTATCAGGCATTTTCAAAGGTGGACCTATGTTAGCCGC CCTGGGGCATGGGAGGAAGCCACCTATTTTTCTCTATCTGGTAACGACAAAGGGAGCTAT TATCTGGGCACAGGATTCCTTGGAGGTTTCCGGATATTACCCT |
| GenBank Accession | FR807225 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:8825771 - go to primer design |
| BLAST e Value | 2e-05 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g15420 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ubiquitin fusion degradation UFD1 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g54720
| Sequence (A. th genome BLAST matches underlined) | >49-K015278-022-287-A07-8409 CTGATCCATGTAGAATTTCCCGGACACTGAAGCCTTTACAATTGAATATATCCTCGTAGA ATCTACTTTTCTAGTAACCGCACGAGACTATGCTGCTCTTGATGACTCGATATACCCCGA GAAAACCCTCTCGGGCGTGTTTACCATGATACTGATCTGACCTTCCTGGTCTTGCTATCA GAACCCAGCACTATGCTCCCACTGCTATTACCACCCATGTATAAAGAGAATAGTGTGATA CTCACAGCTTTGCTATGGGATCCTCCCTATAGTGAGANNNNNCGANNGNANCTNANACCA TACGCACATATTCCTTNCTATCTCTCACAGAAAACGAATCTATACGGACCATAT |
| GenBank Accession | CR770331 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:22233127 - go to primer design |
| BLAST e Value | 4e-13 |
| Hit Clone Code (BAC ID) | K5F14 |
| Hit Gene Code | At5g54720 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ankyrin repeat family protein |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
Gene hit At1g11100
| Sequence (A. th genome BLAST matches underlined) | >69-K020162-022-287-A07t-8409 CCTAAAAAAGAATATTAAAATTCTTCTTATCTACTTCTTCCTCATGTCTGTGGAACTCTC TCCTATTTAGGAGGAANNTAGAATCTCCCTTCTTGCGAATATATTCTATATTTTTCACAG TACATGATTTGCTCGTCATACTATTCCTCGATGCTCAACAAAGGTTAGGTTCCCTCATGG AAGCTTCTTAACCATTTCAGCTGAGGATGACCGTGACGAACTGGATGCTATGGGATCCTC CCTATAGAGAGCCCTTATGGTTCCCCTATCTTCACGAAAAATTGAGGAATAGCTGACCTA TGGAATCCGACTTCGAATCCAGAGGATCGCTGTGATATCTCCACTGTCATATGGCATGAC GCCTCATCCCACTATCTCTTTTATATATCTTCCTCCAACTAACGAGGCTCGCTTCATTTT GATAAGAAAAAGTACCCGCTGATCATATTGTCGTTTCACACCTTCG |
| GenBank Accession | BX530856 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3705003 - go to primer design |
| BLAST e Value | 2e-15 |
| Hit Clone Code (BAC ID) | T19D16 |
| Hit Gene Code | At1g11100 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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