SimpleSearch - Line and FST details


Line specific information

 
Line ID 304G08
Vector Used pAC161
Line Availability available as T3 set from NASC (N429168)
Segregation Analysis 50:37:3
Confirmed for Hit At5g17740
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit K17O22

 
Sequence (A. th genome BLAST matches underlined) 
>63-K015592-022-304-G08-8409
NTTTTGATCCATGTAGAATTTCCCGGACATGAACGCCTTTACAATTGAATACTATCCTGC
CGACCCTGCCGCTTTGAGCCCGGTGGAGCGTGCATGATCGTACCTATAGGGGGCACAATA
GATTATGGAGTGTATTCAAAGCATTCCATTTAGATAGGTGGGACTTTGATTCCTAAACTC
TAAACTAACGGATAATTTTATTTTAAACTGAAAATTGACAATAGCCTAAATTTGTTATGT
AAATTAATTTCAATATATAGCCGAAAATGTTTTGAAATAACAAACTACCTTAGAATTTAA
AATCGTTAATCCCAAAATGTTAAGCAAAACAGCCTAATTTTCTAAGTTTTCATTTGAAAC
ATTGGATGTGCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL947491 [GenBank]
Graphic View Graphic view of sequence AL947491 of line 304G08
Predicted Position of Insertion Chr5:18209411 - go to primer design
BLAST e Value 5e-139
Hit Clone Code (BAC ID) K17O22
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g17740

 
Sequence (A. th genome BLAST matches underlined) 
>63-K015570-022-304-G08-8409
TTCCTGGACTGAAGCCTTTACATTGAAGCTTGGGATCCTCCTATAGTGAGAAAACTGGGA
TTTCTATGGGATACTTCCTTAGCTGGCTCTCGTTCATACGACTCTCACGCTTACCAGTCG
ATCAGAATGTCCTCGATGTATATTCCCGACGAGCTTTACGCAAACTGCTCAGGCTTATGT
CTACACCAATGATAAGCTCTAATTCTGTCAGGCTAATTATGGCTATGGGATCCTCCCTAT
AGTGAGACATACAGACAGGCTTTCTTTCGAGACGCTATGGGATCCTCCCTATAGGGAGGN
CAATATGGAGAAAAATAAAGAGTAATTACTAATTCTTTTTCAATTTAAAAATGTAGAGGT
CCGAACAGATATTAAGATAGGGGAGAAAGGATTCTAACTTCGAATGGATGCTATGTGAAA
AAATAAATGGATGTGATGAAATTA
GenBank Accession AL947490 [GenBank]
Graphic View Graphic view of gene At5g17740
Predicted Position of Insertion Chr5:5857824 - go to primer design
BLAST e Value 9e-39
Hit Clone Code (BAC ID) MVA3
Hit Gene Code At5g17740 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation P-loop containing nucleoside triphosphate hydrolases superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37