SimpleSearch - Line and FST details
Line specific information
| Line ID | 304H04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N429176) |
| Segregation Analysis | 50:49:39 |
| Confirmed for Hit | At5g14340 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At5g14340
| Sequence (A. th genome BLAST matches underlined) | >32-K015592-022-304-H04-8409 AATTTGGATCCATGTAGCATNTCCTCGGACATGAAGCACTTACAATTGAATATATCCTGG CTGCGGCGCCTAAGGGATCCTCCCTATAGATATTGAAGTGCGTTGAAGATGGGACTTGGG TGCAATGTGGTAGTTGTGAGTGCTGACTGGAACTGTCATTGGGAAACCGTCTATCTTAGA CAGGATGCTCGTAGATGTATTGATGACACTAGTGGGATACTACCTACAGTGAGACGAAAA CCGTGCTGTGACAAAATTGGATTGAAGAGAGGTCCATGGACTATAGAAGAAGATCATAGA CTCATGAACTTCATTCTTAACAATGGCATCCACTGCTGGAGAATTGTCCCCAAACTCGCA GGTACTTTATTATTAATACATGCATGCATTATTAGGTTTCCTTTATATTCGTTTTTTTTC TTGGGGAGTTAAACGTTTACGTGTACATGAAGGTTTGTTGAGATGCGGGAAGAGCTGTAG ATTGAGATGGATCAATTATTTGAGACCCGATCTCAAGAGAGGTGGTTTCACTGATGCTGA AGAAGATCGGATTATGGAACTTCACTCTCAACTTGGCAACCGGTACGATAATCTGAAAAA TAAAACTTATCCATATATTTTCATTAGCCGGCGTCAAACTATGGGATCCT |
| GenBank Accession | AL947501 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:4623197 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F18O22 |
| Hit Gene Code | At5g14340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | long noncoding RNA |
| Insertion Classification | TS2TE |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T7N9
| Sequence (A. th genome BLAST matches underlined) | >32-K015570-022-304-H04-8409 AATTTTGATCCATGTAGCATTTCCTCGGACATGAAGCACTTACAATTGAATATCTCATCA GTGTAAGCCATTATTACATCAATCAAGATCATGTAAATAGTAAACAATGAAGGCCCAGCT AATTAAGGTGGCATGGGTATATATTAAACACTTTTGTTTCTATTACGACATGTAATTAAC TTCAAATCAATTGCCTCCATCAATGCTATGGGATCCTCCCTTTAGTGAGATGGGAGGCAC CATCAAAAGACGCATGGAGGGTATTTCCCAACATGCTACAAACGTCGACGTCTTGACAAT AACTGTATTGTTCATGATAATGATATTTTGCTTTCAAACATAATCTCAGTCTAATCTTTT TTTTTTAATCAAGTTTGCATGACTCCTAAAATTAACCCCCCATAAGGAAAAAAGTTCTCT TAATTGGAAGGGATCTTAAGCTTAAAGATAAAAGGATGTATCCAAATTAGCTATGGAATC CTCCCTTAGGTGGAGANGAGACCCGATCTCAAGAGAGGTGGTTTCACTGATGCTGAAGAA GATCGGATTATGGAACTTGACTCTCAACTTGGCAACCGGTACGATAATCTGAAAAATAAA ACTTATCCATATATTTTCATTAGCCGGCGTCAA |
| GenBank Accession | AL947500 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:9460330 - go to primer design |
| BLAST e Value | 2e-73 |
| Hit Clone Code (BAC ID) | T7N9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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