SimpleSearch - Line and FST details


Line specific information

 
Line ID 315B05
Vector Used pAC161
Line Availability available as T3 set from NASC (N430161)
Segregation Analysis 3:2:2
Confirmed for Hit At5g40780
Parent of DUPLO pair none
Parent of pair(s) 4553, 4646, 4660, 4696, 4702, 88280, 88283

Gene hit At2g19610

 
Sequence (A. th genome BLAST matches underlined) 
>34-K015820-022-315-B05-8409
TATCCTGAAATTTCCCGGACTGAAGCATTTACATTGAATATATCCTGACACATGGATTTT
TGCTTAGGTCCGACATCAGAAAAGAACAGATGGGTTGGGACAATAGACTCTGTCTTTAAC
GGGGATAGCCTTCTCCTTCTTGCGCTGGATCATAAGAGTAATAGCATCAGCATCAGCAAA
AGCTCTACAATCCTCTGGCACAAGATCATTCTCGCAATCCGGGTAAGGGCAGATTGCTGT
GTTCCCTCGTAGTATTTGTTCGGATGAGAAGGGCTTCCTCATGCACGTAACGCAGATGCG
GTGGAAGCAGCCTTGCACCTCAAACTTATCATTAGGTGAAACGTAAGCGTAGCAGACTGG
ACAACTCTCATACTCGGTGTCGCCTTCACACCATCTATGGGATCCCCCTAATAGTGAGAG
NAAAAANGANGAANAGTCCTCTGTGCTTCCGAAACCAGACCTTTGATAGTCCTGAAACAA
ACAAGACAGTCGTGCTCAACCAAGACAACCAATATTGTGGTCCCGTCAATGAGTCCTAAC
AGACTCTGTATGAACTGTTCTCCAGGCTGTACAGCGCATCTCTGACAAGTCCTCTATTCG
ACTCTATGCCTCCCTGGGAAGTGGGGATCCTCTACGGGATACTCCCTATGGGGGGGGACA
ATCCGTAAATGGGGGAAATATTGGCCTAAAGTGGTTAGGCCATCGTCCCGCAAAGGGGGG
AGGGCCTCAGAATGCCCCAGAAACCCTGAAATTTATTGGGCCTTG
GenBank Accession AL948761 [GenBank]
Graphic View Graphic view of gene At2g19610
Predicted Position of Insertion Chr2:8485441 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F3P11
Hit Gene Code At2g19610 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g40780

 
Sequence (A. th genome BLAST matches underlined) 
>34-K015824-022-315-B05-8409
CCTGGTATTACTCTTTCTTTTTCTCCTAGTTGCAGCTACAAACCATAATTAAGATGACAA
AAAAACTCATCATCAGATTTTTTGAACAACTAACACCTTAAAAATGTAAATATACATAAG
TAAATAATAAACGTGAATTTCAATAAATTTTCTTACCAACGTAGAAATTACGGACAAAGA
ACCGAAGAGTTGTGGTTGGTCTGAAATTTAGCTTCTTGACCAATAAAGTCTCCATCATAT
CAAATACCGGCATTGCATATATCTGCAACAAAACCAAGATTTGGTTTAGACCTATGGGAT
CCTCCCCTTATAGTGAGANCCNCNNNCTTATCNTTCCCCCAAACCCAACCCTATCAAACT
GGACAACTCTCATACTCNATGNCNCCGTCACACCACCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL948762 [GenBank]
Graphic View Graphic view of gene At5g40780
Predicted Position of Insertion Chr5:16326599 - go to primer design
BLAST e Value 5e-133
Hit Clone Code (BAC ID) K1B16
Hit Gene Code At5g40780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation lysine histidine transporter 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37