SimpleSearch - Line and FST details


Line specific information

 
Line ID 316B12
Vector Used pAC161
Line Availability available as T3 set from NASC (N430264)
Segregation Analysis 50:20:9
Confirmed for Hit At5g03775
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At5g03775

 
Sequence (A. th genome BLAST matches underlined) 
>90-K015853-022-316-B12-8409
TGATCTGACATTTCCTGCCTTCGGTTTAACTATCAGTGCTGATCCCATTTACTCGATCCA
CAATCGTTTGATTAGAATCAAACGCCTTATCCATTAGGCCACGGGTGCTTTGTTGGGTAA
GCTATGGGATCCTCCCTATAGTGAGANGNAANGGTTGAGAGTATACCCTATGGGCTATTA
GAGATTTCACTGGCTTTGTTAGTGAGAGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL948889 [GenBank]
Graphic View Graphic view of gene At5g03775
Predicted Position of Insertion Chr5:998993 - go to primer design
BLAST e Value 3e-23
Hit Clone Code (BAC ID) MED24
Hit Gene Code At5g03775 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation tRNA-Arg (anticodon: TCT)
Insertion Classification TS2TE
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g21140

 
Sequence (A. th genome BLAST matches underlined) 
>90-K015857-022-316-B12-8409
TGATCTGAAATTTCCCGGACATCGAAGCCATTTACCGTCTCCAGAACATTTTATCTATAT
ACTCGCGCTTAATCATAAACCCTAAAGTCCAATTGACAAATCACCTATGGGATGCCTCCC
TATAGAGAGCATACCTTCCTCAGAGGAATATATCTCCTGACCATAACTGAGTGTGGATAT
GATTCCTATTTCAATAACGATGCTCTTCTCCTACGCGGAAAAATCATGATCCTCTCCCTA
TCGAGAGATGGGTGCTTCTTGATTCCTCATTTTATCCTATGGGATCCTCCCNTATAGAGA
GAACTTTCTGTCTCCCCAACAAATACAAAACCCTAATTCACAGAAACAATCAGGGTTCAC
CAGATTCTAAAACCCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL948890 [GenBank]
Graphic View Graphic view of gene At5g21140
Predicted Position of Insertion Chr5:7189877 - go to primer design
BLAST e Value 1e-34
Hit Clone Code (BAC ID) T10F18
Hit Gene Code At5g21140 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation embryo defective 1379
Insertion Classification Promoter
Confirmation Status unknown


Last Updated on 10.06.2021 13:37