SimpleSearch - Line and FST details


Line specific information

 
Line ID 316F11
Vector Used pAC161
Line Availability available as T3 set from NASC (N430311)
Segregation Analysis 92:69:69
Confirmed for Hit At1g07160
Parent of DUPLO pair none
Parent of pair(s) 917, 12353, 69486

Gene hit At1g07160

 
Sequence (A. th genome BLAST matches underlined) 
>86-K015857-022-316-F11-8409
ATCTATCTGTATGGGATCCCCTCGCACATTATAGATGATATAGAAACGATCCCCCTTAGC
TTCTCTTTTACCTCTCTTGCTCCAAACAGAGTAACCATCACCTTCCCTCTCCACTGATCT
ACTCTCCTCCCTCGGCGCACCCGCATTCTATATAGGAACTGNCATTACCAACCGGACCCA
CCGGAATATCAAGCGTCGTCAGTCGTTTCATCTTCAGAATGCTTCCCGGACCAGAGTCCG
ATCCAAACCCTATGGGATCCTCCTAAATAGTGA
GenBank Accession BX942953 [GenBank]
Graphic View Graphic view of gene At1g07160
Predicted Position of Insertion Chr1:2199134 - go to primer design
BLAST e Value 9e-73
Hit Clone Code (BAC ID) F10K1
Hit Gene Code At1g07160 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein phosphatase 2C family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g19750

 
Sequence (A. th genome BLAST matches underlined) 
>86-K015853-022-316-F11-8409
TGATCTGANATTTCCCGGACATGAGCCATTTACAATTGATATATGTAGATGGGTTCTTGC
CTTCTGTGATCTCGACGGGACATCCAATCAGCTATGGGATCCTCCCTATAGTGAGAGTAA
AAATACACTTGTGCTTGGCAATTAGACCACTTGCCTCGTAATCGGTGGCCCGCTTAACAT
CAAATACAGCAGCTGAACCATCTGCTGCTCCAGAGAGCAGATATCTCCCCTCCGTCAAAT
CAACCTGATAACACAGTTAATAACACAACCAGCTACCAAAATATGGCTACTCTATGGGAT
CCTCCCTATAGTGAGATTNTTTCCTTTGGAAAAGAAGCGGATCAAAATTTTATATAGAAT
TGTATTCGACTGATGATTACTGGTAACGATAATAAGCTACTTTACTCATGCTTTTCCTCA
TCTTCAAAAGTCNTTAGTTTAAAGAACCAGGCTACCAAATTGTCATGCCTTGATGATTTG
CCAGATGGTGCCCATGTCAGGGAATGGTCTACTTCCAGCGAGTAGGTTTCCCATACTGCA
GGGTGTGATGGGGCCAATATGTTTCTGGGACCTCCCCCGTGCTGAATGTTTCCGTTTTCT
A
GenBank Accession AL948946 [GenBank]
Graphic View Graphic view of gene At1g19750
Predicted Position of Insertion Chr1:6827445 - go to primer design
BLAST e Value 1e-96
Hit Clone Code (BAC ID) F14P1
Hit Gene Code At1g19750 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Transducin/WD40 repeat-like superfamily protein
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37