SimpleSearch - Line and FST details
Line specific information
| Line ID | 323E03 |
| Vector Used | pAC161 |
| Line Availability | line died - no seeds available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3966, 4000, 4088, 9884 |
| Note |
Gene hit At4g33990
| Sequence (A. th genome BLAST matches underlined) | >21-K015951-022-323-E03-8409 TATCCTGTAGATTTCCNGGACATGNAGCCATTTACAATTGATATATCCTGGCATCCTATG GGATCCTCCCTATAGTGAGATTAGATGCAATTTTTGAATACTGTATTCTTGTACTATCCA TTAGATGAACTTTTTGACTAACCATAATGTCAAATGAATAGAAGCGAATAAGAAATTGAG AAGTTTGGTTCCTTACAATGCTAAGGGCACCAACACGCTCCCCATAAAGTCCCATATTTT TGGCGTAACTTTGAGCTATCAAGCATTCACCGCCATCAGCAACAAATGTACGGACAGATT GTGCATCTGTGTCAAGGCTACCACTATGGGATCCTCCCCTATAGTGAGACCTCTATTGCA ATCAACGGCTTCAGTGCAAGCCGAAAGGAGACTCACAACGGTAACTGAATCCATAGCTCT CAACCCATTATACAGAGTTAACGCCTCTTTAGCATTTCCGCTTTGACAATACCCAGAAAT CATTGCATTCCAAGAACCCATATCTCTTACAGGCATTTCATCAAACAGTATACGTGCATT CCCCACAGCTATATATCGAGAGTACGAATGAATCAACGAGGCAGCAACGTAGACATCCCA CATAAACCCAAACTTCAAAATCAAGCAATGAATCTTATTCCCATCAATCACAGTCCTACA AGCTTTCAAAACCGAAGGAAAAGTCCTGTAATCAGGGGTAAGTCCAGAACTCCACCCTAA GAGACTAAAACACCTATTCACTTCTGAAGAATTTCCCCGCCCGGCATTAACCAGAAATCA T |
| GenBank Accession | AL949788 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:16291816 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F17I5 |
| Hit Gene Code | At4g33990 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Tetratricopeptide repeat (TPR)-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g57740
| Sequence (A. th genome BLAST matches underlined) | >21-K015947-022-323-E03-8409 TGATCCTGTAATTTCCCGGACATGAAGCCTTTACATTGAATATATCCTGACATGGAAATA ATCGCTATGGGATCCTCCCTATAGTGAGACCTGGACTTAGGTTTTATGATGGACGATTTT GGTGAATATTTCAATGCTGAGATTCGACACATATAATTCGAGACTTTCCTGCGCATGACG CTGTTGAGCCCCTAATAATATCGGCAGTCCCTGACATTGAATCATCACATCCCATTTTGT GTATCGAGATAGATTATGAAATACAGATGCTATGATTATCCTCGATATGGCGGGAGGTCA ACCTGCAGACACGCTATGGAATCCTCCCATTCCCGAGATAGTGAGANNNANATTTNNACT AATTTTACTCAATCTTTATACGCTATAGCAAGAAATATTCTACGGGATCCTCCCTATTTT GAGACCNTAATGCACACCCGATATGTTCCCCTCTGTGCCCATACAAAACTAATAATCCTT GCACGGTCTAGAAACATCTTACAATCCCCACAAGAACTTTCTGATTTAGAAGAACCCACC TCTCCTTTGTTCCTTCCAGACACCGTATAGAAAAAAAAAATCTAGGGAAGGATAATGCCA CTGTGAACCCCATCGTCTAAGAATTCTCCCCCCTCGGGCAAATTGGTCCCCCGTTCAAAA GAAACAACCCGCAAGGCAAGGGCACACAACCAAAAACACTCAAAAAAGAAAAAACTATAT TTATATACGAGGCCAACCACCCCGCTCGATTGGGATGGTAAACCACCGTGACCTCCTCCC CAAAAAACCGGACTCGACTATATTGATCCTCTCGCCCCTCCAAGAGAGAGCGGGAAAGGG CAGGCAGAGCTCGG |
| GenBank Accession | FR807893 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:23394762 - go to primer design |
| BLAST e Value | 4e-04 |
| Hit Clone Code (BAC ID) | MRI1 |
| Hit Gene Code | At5g57740 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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