SimpleSearch - Line and FST details
Line specific information
| Line ID | 335D04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432104) |
| Segregation Analysis | 100:95:74 |
| Confirmed for Hit | MWD22 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At2g43010
| Sequence (A. th genome BLAST matches underlined) | >28-K016067-022-335-D04-8409 TGTCATGTAGATTTCCCGGACTGAAGCCATTTACAATTGAAGCCATGTAGATTTCTAAAA TGTCTTCTTCTTTTTTCATTTTATGTTTGTATGTGATGAATTATAAAGGAAAAAAGAATT ACTGATCAGAAAATTTCGTACGATCTGTTTAATGAAGTCAATTTCTGATTTAAGAGACTA TAAAAGTAACAAAATTTCATAAACTATTATAAAATCTGAGTAAGATCCTTAATCCAAAGT TTAATACTATGGGATCCTCCCTATAGAGAGAGACAAGTGGTTCTGCACAGCCAAACTCAT AGAGAACAAACCCTACCCCAGAAACGAAATCATTATGAAGAAGCCCTAAGATCCAGCACC TTTCTTGAAGATCAAGAAACTGTCTCTTGGATCCAATACCCTCCAGATGAATACCCGTTC GAACCCGAAGACTTCTCCTCCCACTTCTTCTCAACCATGGATCCCCTCCAGAGACCAACC TCAGAGACGGCTAAGCCTAAGTCCAGTCCTGAACCTCCTCAAGTCATGGTTACGCCTAAG GACTGTCCTGACCCTCCTCCTCTAGACATGCCTCCTCCAAGACTTAGGTATACTTATTCA TCGTCGCCGGTTAAGGGAAACAGAAATGGAACAGTACTCGGTAACGACCGTTGGACCTAT GG |
| GenBank Accession | CT026272 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:17886983 - go to primer design |
| BLAST e Value | 2e-159 |
| Hit Clone Code (BAC ID) | MFL8 |
| Hit Gene Code | At2g43010 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | phytochrome interacting factor 4 |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed |
Gene hit MWD22
| Sequence (A. th genome BLAST matches underlined) | >39-K020162-022-335-D04t-8409 GTGACGAATTACAAAGGAAAAAAGAATTACCGATCAGAAAATTTCGTACGATCTGTTTAA TGAAGTCAATTTCTGATTTAAGAGACTATAAAAGTAACAAAATTTCATAAACTATTATAA AATCTGAGTAAGATCCTTAATCCAAAGTTTAATGCTATGGGATCCTCCCTATAGTGAGAC TATGGGATCCTCCCTATANTGAGAGGTATNTCGAACTTCAACCACTCTAGGGTATCCTCC CTTTCCAAAGAAAATGGGCCCCCCCGTGAAAGTAACAGATTCGGGCAAGAAGAAGAAACT TACANCNTTGTACCTGCTCACGGTTATTTTGGCCGATTGATTTTCCAATATGCTATGGGA TCCTCCCTATAGTGAGA |
| GenBank Accession | BX530874 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:20834238 - go to primer design |
| BLAST e Value | 8e-74 |
| Hit Clone Code (BAC ID) | MWD22 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX530875 [GenBank] |
Gene hit At3g31365
| Sequence (A. th genome BLAST matches underlined) | >28-K016062-022-335-D04-8409 TGTCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATCCCCGGGGATCAAACG AAAGACCTTATATGTTTGATATCTCATGCTATGGGATCCTCCCTATAGTGAGAAATTACT GATCATAAAATTTCGTACCATCTGTGTAATGAAGTCTATATCTGATTTCAGAGACTATAA AAGTAACTTAATTTCATAAACTATTATAAAATCTGAGTAAGATCCTTAATCCAAAGTTGA ATACTAGTCCCATAAGAGACTCACGTTGTCATGGATTCTTTTTGGGCAAATGATCTGAAC AAACGGGCGTCTCGTCGAACTCAAAGGCGTTTGTTTCTGACTCTGGATCGGAAGCGACAA AGTATACTTAATTGCCTTCGATATCAAGAAACAAAGCATCTCCTGATAAGTGGTATATTT TATATATAGATATTCCAAGGTTATTAATAACCGACATGCGCTATGGGATCCACCATATAG TGAGATGGTCCCGATTTTTTTCTTTTCCCCTTGGAAATTACAATTCAAACTTTTCTTTTT TGGA |
| GenBank Accession | AL951319 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:12729582 - go to primer design |
| BLAST e Value | 7e-64 |
| Hit Clone Code (BAC ID) | T22B15 |
| Hit Gene Code | At3g31365 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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