SimpleSearch - Line and FST details


Line specific information

 
Line ID 336H07
Vector Used pAC161
Line Availability available as T3 set from NASC (N432251)
Segregation Analysis 50:11:9
Confirmed for Hit At5g57660
Parent of DUPLO pair 12241
Parent of pair(s) none
Note

Gene hit At1g65010

 
Sequence (A. th genome BLAST matches underlined) 
>56-K016157-022-336-H07-8409
TTTCCCGGACTGAAGCATTTACATTGAAGCATAAACATGACTAAGGAAAATGTCGTCGTT
TTCTGTCTCTGTTCTTTTCGCAAACCGGCCTTTGATCCTTGGCCGTGACTCTGCATAAGC
TTTCCTCGAAGCGTAACGAATCGTCTTCTCAAATTTCCTGTTCTTTCTCTTCTCTCTGTA
CCTCAAAACCCTAGGGGCTTGGACAATGAAAAGGCTGCAACATCAAATATTCAGAATCTA
TTGGATCAAAGGACAGAACTTTCGATAGAGTTGGAACGATGTAAGGTGGAAGAAGAGAAG
AGCAAGAAAGATATGGAGAGCTTGACGTTGGCTTTGCAGGAAGATTCTACTGAATCAAGT
GAAGCGAAGGCGACGTTGTTGGTATGTCAAGAGGAGCTCAAGAACTGTGAATCCCAGGAT
GACAGCTTAGAAGTTGGCTTCAAAGGAGACAAACGAAAAGTATGAGAAAATGCTTGAGGA
TGCTATGGG
GenBank Accession AL951534 [GenBank]
Graphic View Graphic view of gene At1g65010
Predicted Position of Insertion Chr1:24151088 - go to primer design
BLAST e Value 1e-151
Hit Clone Code (BAC ID) F13O11
Hit Gene Code At1g65010 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation WEB family protein (DUF827)
Insertion Classification CDSi
Confirmation Status failed

Gene hit At5g57660

 
Sequence (A. th genome BLAST matches underlined) 
>56-K016135-022-336-H07-8409
TGATCATGAGATTTCCCGGACATGAAGCCATTTACAATTGAGCATAAAATGACTAAGGAA
ATGTCGTCGTTTTCTGTCTCTGTTCTTTTCGCAAACCGGCCTTTGATCCTTGGCCGTGAC
TCTGCATAAGCTTTCCTCGAAGCGTAACGAATCGTCTTCTCAAATTTCCTGTTCTTTCTC
TTCTCTCTGTACCTCAAAACCCTATGGGATCTCCCNTTATAGTGAG
GenBank Accession AL951533 [GenBank]
Graphic View Graphic view of gene At5g57660
Predicted Position of Insertion Chr5:23356687 - go to primer design
BLAST e Value 2e-79
Hit Clone Code (BAC ID) MUA2
Hit Gene Code At5g57660 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation CONSTANS-like 5
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37