SimpleSearch - Line and FST details
Line specific information
| Line ID | 339B01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432461) |
| Segregation Analysis | 100:94:61 |
| Confirmed for Hit | At2g26230 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At4g37685
| Sequence (A. th genome BLAST matches underlined) | >02-K016160-022-339-B01-8409 ACTGAAGTCATTTACAGTGTTTTTTGGGAATTATTATGTTTTTTAGGGCCATATGCATAT TGAATTATTATTCAGCCATGTTTTTTAGGGCTGATTCAGTGGGATTCTTCGAAGAAGAAA ATGGAAGAGACAAGTGCAAGTGCTGCATGAACTGTCTCAAGGCTACTCACTTCAATAATG TGAAAGTGTCATGTATCTATGGGATCCTCCCTATAGTGAGAANACCAAAAGAGACTCATT CCCATTCTTTTTCACATTCATCAATGCACATGATCATCCAAATCCCAAAAGTGGCGGAAA AGGGTGTAAAACCCTCGCGCCCCCACCCCTCCTTCCCCCGCCGCCGATACTTATCTTTCC GTTCTTCCACTCCCCCCGAGCCCAAAATCCACCAAATCCCCCGGCCCCCCCTTTTATCCC CCACGTTCCTTTTCCACCCCCTAACCCGCTATAACCTCGTCTACCAACGCTCCTAACAAG GCCCCGCGGGGGGAGTCCACCCATGCGCCTCACCACTATATATGAAAAACTCCA |
| GenBank Accession | AL951854 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:17705577 - go to primer design |
| BLAST e Value | 3e-54 |
| Hit Clone Code (BAC ID) | F19F18 |
| Hit Gene Code | At4g37685 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 338B01 |
Gene hit At2g26230
| Sequence (A. th genome BLAST matches underlined) | >02-K016138-022-339-B01-8409 AACATGACCTCTTTCCTGTTTGCAGTTACGGTATTATTCTTGCTACAAAAGCCAAAAGTT GACCTTACACACTTCATTTAAATTGTTATTTCATAAACGAGGCAAACGCCAAAAGTTGCA GAACCTGTGAAATTGTGTTTGATATTTCCATGTATGATGTATTGTCTTAAAACCTCATAG TTTCGAGGTTATACGGCTTATAGTTGCTTCTATAGATCCATGAGGTTCATCGGTTGGCAG GTACACATCATCTTTAAACTGCAAATGCAAGTCATTGGAAACGATTCATACCCTGAAATT ATTAGCTTTTATGCGGCTTTTTTGTTGTCTGATTTTAAGTTTATAACTATGTATTACTGC TGCTACTTATCTACTTATCATTTTCGTTTACGTTTTGTGGTTTCATCATAAAGACAACAT CACATAGAGGTTCTTACCTTCACCATTGAAGGGTTTTCCTTCGTTGAAAGATTTACTGGT AGAAAATGAATATTTGGCATTTTTACGTGAATCGATGATACATCAGCGAACCTGATCATG TTAATAAGAACCTTTATCATGGCAAGAATCTCATCCTCACACCAACAGCGACATAAATAT AGACTGATATGTGATACCTTTTGCATACGGCGCCTTCCATGAAGTAAAAACTGCGTTGAC CAGAAGGGCTATACCCCCAGGTTTCTGGGGGACCAAAAAAAGGATCCAATAGAATTTTCT TACGGCCCTGAACTTCTCCCCTAAGCAAAATCCTTTTGGTGGAATGCTTGGAACTGACTC |
| GenBank Accession | AL951853 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:11167127 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T1D16 |
| Hit Gene Code | At2g26230 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | uricase / urate oxidase / nodulin 35 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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