SimpleSearch - Line and FST details
Line specific information
| Line ID | 340A03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432547) |
| Segregation Analysis | 100:88:78 |
| Confirmed for Hit | At5g62890 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4979, 4984, 5012, 5040, 5044, 5094, 10208, 73602 |
Gene hit At5g62890
| Sequence (A. th genome BLAST matches underlined) | >17-K016152-022-340-A03-8409 TTTCCCGGAATGAAGCCTTTACATGGAGTAATATATATGTAGGTCCACAATGGCTCAAGA CTTGAAGTGATTGAGAAATTGACCTCTCTTGGCTTTTATGTTTACAAGTTCAAAACATGC CTGCCGGTTGCTATGGAATCCTCCCTATAGTGGCGAAGAGATGAAATCAGAGAAAGAAAA AATTCCCATTTCACAATGATAAAGCAGGAAGTAATCATACATCTATAGGGTTCGAGGGAT CACTGAATCTGCCAGAGAGGATTATGGATATCGCTGTTGGCACGAATGTGTAGGAAGCTC CAACAACAGCAGGCAATCTATGGGATCCTCCCTATAGTGAGAAGCCATCCTAATCCATCT TGCTAATGTTCCTAATCCATCTTTGCTAATGTTCCGGTCTTCAAACAAGAAAGAGCTATG GGATCCTCCCTATAGTGAG |
| GenBank Accession | BX890989 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:25244893 - go to primer design |
| BLAST e Value | 2e-80 |
| Hit Clone Code (BAC ID) | MQB2 |
| Hit Gene Code | At5g62890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Xanthine/uracil permease family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g46880
| Sequence (A. th genome BLAST matches underlined) | >17-K016161-022-340-A03-8409 ATTTCCCGGACTGAAGCGATTTTCGGTTTGAAGAAAAGCGTAGCTGGTTCGGGTATTGAC TTTCTACTTGGTTTGACTCCTTTGAAATGTTTTGGCTTATTTGCAATTAATATGCTACCT TCTTTATGCTTTTGGCTTTTTGTATTTATTACTTTGGTCTTGCCCTTAAATTAATTCTAT ATAAAATATCGAAATGGGACGATTAATATTACCATTTTTAGCTAAAGATAATGTTTCTCG TGGGGTTTGAATATCTGCTGGTTGAGTCTCATTTAAAGATTAGTATCATGCACATTAGAA TTAACATATGTTAAAATGCTAATATCTGGCGATTGCGACAGACTTTATTTTAATTGTTAT ATCATTATTGCGATACAATGATTAAGTTCGTGCCAAAAAAGTATTTAATTAGACAAAGAT TCCTATGGGAT |
| GenBank Accession | AL951968 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:19035730 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MSD23 |
| Hit Gene Code | At5g46880 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | homeobox-7 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
