SimpleSearch - Line and FST details
Line specific information
| Line ID | 340E05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N432597) |
| Segregation Analysis | 50:45:45 |
| Confirmed for Hit | At5g25380 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 348, 3560, 3707, 9763 |
Gene hit At5g25380
| Sequence (A. th genome BLAST matches underlined) | >14-K118808-0022-340-E05C-8409 TCGGACGAGCCATTTACATTGAATATATCCTGCAATTGATCAATTGATCCATGTAGGCTA ATTGATCGGTTCATGTCTCATAATTACATTGAAAAGCAGAAGCTCCAGCTACTTGGTATC ACTTGCATGTTAATAGCCTCGTGAGTTACCACTTTTACTGTTTCCTCATTCACAATGCAA TGAAAGTAAAACTGAACAATCAGTGGACACAGAGGAACACATGTTTGCTCTCATTGCATA CTTAGAGCAAGTTTTACTCTGGAATATATACTTAAATTAATAATTACAGATTAGTACTTC TCAAGTAACTAAGGTATTCCTCCTTGTTGAAGCAAATACGAAGAGATTAGTGCACCGCGG TTGGAGGAGTTTTGCTTCATTACAGACAATACATACACAAGACTAGAAGTAATTAACATG CAGACTCCATCTCTATCAGTTCTCAGCTAAGATGATTCATTCTTAATAAAAGATTAACAA AAAATACAATACACTATTTTTTCAGGTACTAAGTATGGAGATTAAAGTTTTAAACTCTCT TCATTTTCGGTTATCAGTTCCCACCACCAAAACGTTTCTAGGGTAATCAT |
| GenBank Accession | HG968905 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:8816319 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F18G18 |
| Hit Gene Code | At5g25380 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cyclin a2;1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL952037 [GenBank] |
Gene hit At3g11840
| Sequence (A. th genome BLAST matches underlined) | >37-K016161-022-340-E05-8409 TGTCCTGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATATATCCTGCAACTTCAA GCTTCAAGCTTCAAGCTTACAAGTTTTGGCAATGAAGCCATTCAAGCCATTGTGGCGTAC ATAAGTCTTTGATCTTGTTCGTAGTCAAGTGTACTATGGAAGACTAACACGGACGACGGC GTATCAAAGGACTATATGAGTGCTCTTCATCTTCTTCACTTGATCGGTATTCCATCAAAC GACGCAAGATCAATCTTGATGGAAAACGATCGAGTTATGGAATCGTTGACTTGGGTTTTA CACCAAGAAGACTTTCTCAGTAAGGCTTATACAATTGTGCTATTGAGGAATCTAACGGAA TACACTTCCTCTCATATCGTAGAGAGATTGAATCCCGAGATTTTTAAAGGGATCATAGGG TTTCTCAAGGATGTTGTAAATAGTGTTAATCGGACGAGCCCTACCGTGAGAGAAACGGTA CAGTCATCATCAAGGCCTATGGGATCTTCCTAATATANGGAGAAGANNNNNNNNNCNGNN NCTGAANNNNNNNGGGNNATTCTGGNNTCTATTNCAACTTTTTCCTTGATCCAGCAGACA ATTAACGACTTTTTGAATAAGATACGCTGGACACGCCCAAGGCCTCGCTTAGTCAAAAAG TGTACCCAAACAACCGCTTTACAACCAAGAACGGGATGCCGCGTTGACGGCTCGCGGGGG ACGCCATTTTCGCCCTTTTCAGAAAAGGAATAAATAAGCCTTTGCTTTCCCAATAATATC TTTCCCAAATTAACCCATAC |
| GenBank Accession | AL952038 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:3737583 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F26K24 |
| Hit Gene Code | At3g11840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | E3 ubiquitin-protein ligase PUB24-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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