SimpleSearch - Line and FST details


Line specific information

 
Line ID 346B03
Vector Used pAC161
Line Availability available as T3 set from NASC (N433135)
Segregation Analysis 50:50:40
Confirmed for Hit At5g60520
Parent of DUPLO pair none
Parent of pair(s) 5549, 5608, 5637, 5650, 5739, 10409

Gene hit At5g51750

 
Sequence (A. th genome BLAST matches underlined) 
>18-K016240-022-346-B03-8409
TGAAGCATTTACATTGTTTTAGACTTTACTTGTAGGATGTGTGGATTTGAAAGAACAGTG
TTTTGTTGTATATTTCTGGGGATTTTGATTTGATAGAAGTGGAGGGAGTGTTCTTATATA
CCAGAGAGGCTGGAAGTAAGCAGCAGAGACCGGATTAATTGACGTGGCCAGAGGTGATCG
AAATCACACTGAAGAATCGAAGACCGTGTTAGAAACAGCTTCGACTTTGTTTATTCATTC
TTTGGGAGAACCGCCACTATGGGATCCTCCCCTATAGTGAGAGATCCTGGTTTGGTCTAC
GACATTGGACCTCAAGAGTATTTTGAATTCCTCTGCACTCAAGATTTAAGTCCATCACAG
CTTAAGGTATTCACAAAACATTCAAACAGAACCTGCAAACACACTCTTGCCAAGAATCCG
GGAAACTTGAACTACCCGGCGATATCAGCTTTGTTCCCAGAGAACACACATGTTAAAGCT
ATGACACTTAGAAGAACAGTGACCAATGTTGGTCCTCACATTTCAAGCTACAAGGTTTCT
GTCTCGCCATTCAAAGGCGCATCCGTAACTGTCCAGCCCAAAACACTCAACTTCACTTCG
AAGCACCAGAAGCTTTCCTACACGGTTACTTTCAGGACAAGGTTCCGGATGAAGAGGCCT
GAGTTTGGTGGCCTATGGG
GenBank Accession AL952797 [GenBank]
Graphic View Graphic view of gene At5g51750
Predicted Position of Insertion Chr5:21021906 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MIO24
Hit Gene Code At5g51750 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation subtilase 1.3
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit AL952797 [GenBank]

Gene hit At5g60520

 
Sequence (A. th genome BLAST matches underlined) 
>18-K016240-022-346-B03-8409
TGAAGCATTTACATTGTTTTAGACTTTACTTGTAGGATGTGTGGATTTGAAAGAACAGTG
TTTTGTTGTATATTTCTGGGGATTTTGATTTGATAGAAGTGGAGGGAGTGTTCTTATATA
CCAGAGAGGCTGGAAGTAAGCAGCAGAGACCGGATTAATTGACGTGGCCAGAGGTGATCG
AAATCACACTGAAGAATCGAAGACCGTGTTAGAAACAGCTTCGACTTTGTTTATTCATTC
TTTGGGAGAACCGCCACTATGGGATCCTCCCCTATAGTGAGAGATCCTGGTTTGGTCTAC
GACATTGGACCTCAAGAGTATTTTGAATTCCTCTGCACTCAAGATTTAAGTCCATCACAG
CTTAAGGTATTCACAAAACATTCAAACAGAACCTGCAAACACACTCTTGCCAAGAATCCG
GGAAACTTGAACTACCCGGCGATATCAGCTTTGTTCCCAGAGAACACACATGTTAAAGCT
ATGACACTTAGAAGAACAGTGACCAATGTTGGTCCTCACATTTCAAGCTACAAGGTTTCT
GTCTCGCCATTCAAAGGCGCATCCGTAACTGTCCAGCCCAAAACACTCAACTTCACTTCG
AAGCACCAGAAGCTTTCCTACACGGTTACTTTCAGGACAAGGTTCCGGATGAAGAGGCCT
GAGTTTGGTGGCCTATGGG
GenBank Accession AL952797 [GenBank]
Graphic View Graphic view of gene At5g60520
Predicted Position of Insertion Chr5:24332953 - go to primer design
BLAST e Value 9e-82
Hit Clone Code (BAC ID) MUF9
Hit Gene Code At5g60520 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Late embryogenesis abundant (LEA) protein-like protein
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37